Hb_000186_280

Information

Type -
Description -
Location Contig186: 329362-334610
Sequence    

Annotation

kegg
ID rcu:RCOM_0903330
description hypothetical protein
nr
ID XP_012091297.1
description PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JAD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21173 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18248: 332043-334140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_280 0.0 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
2 Hb_000684_420 0.052321993 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_001969_040 0.060791611 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
4 Hb_002400_180 0.062014387 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000076_080 0.0627157417 - - PREDICTED: protein MOS2 [Jatropha curcas]
6 Hb_000645_150 0.06349045 - - zinc finger protein, putative [Ricinus communis]
7 Hb_012305_070 0.0638448287 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001616_090 0.0648687083 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
9 Hb_002097_090 0.0669058348 - - Splicing factor 3A subunit, putative [Ricinus communis]
10 Hb_000236_370 0.0692928237 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
11 Hb_004324_280 0.0708365465 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
12 Hb_000462_150 0.0732981721 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
13 Hb_009411_020 0.0747064937 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
14 Hb_003384_030 0.0760094453 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
15 Hb_000120_500 0.0771511204 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
16 Hb_000373_270 0.0776833477 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
17 Hb_001829_010 0.0791935015 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
18 Hb_004678_060 0.0797498787 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_018663_020 0.0797915433 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
20 Hb_004724_360 0.0799730516 - - OTU-like cysteine protease family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000186_280 Hb_000186_280 Hb_000684_420 Hb_000684_420 Hb_000186_280--Hb_000684_420 Hb_001969_040 Hb_001969_040 Hb_000186_280--Hb_001969_040 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_000186_280--Hb_000076_080 Hb_000645_150 Hb_000645_150 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070 Hb_000684_420--Hb_000076_080 Hb_002097_090 Hb_002097_090 Hb_000684_420--Hb_002097_090 Hb_000684_420--Hb_002400_180 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_000462_150 Hb_000462_150 Hb_001969_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_001969_040--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_001969_040--Hb_018663_020 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_002818_040 Hb_002818_040 Hb_001969_040--Hb_002818_040 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_000803_300 Hb_000803_300 Hb_002400_180--Hb_000803_300 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_001504_160 Hb_001504_160 Hb_000076_080--Hb_001504_160 Hb_000076_080--Hb_004724_360 Hb_000076_080--Hb_002097_090 Hb_000076_080--Hb_002400_180 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_000645_150--Hb_002097_090 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_000645_150--Hb_012305_070 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010 Hb_012305_070--Hb_000684_420 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_012305_070--Hb_000236_370 Hb_012305_070--Hb_003384_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6806 6.32848 2.86855 3.30544 13.1553 17.8525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.78367 7.92751 6.03275 4.55724 2.44852

CAGE analysis