Hb_012305_070

Information

Type -
Description -
Location Contig12305: 41626-60820
Sequence    

Annotation

kegg
ID rcu:RCOM_1000010
description hypothetical protein
nr
ID XP_002519202.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5SP90
description Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Danio rerio GN=smek1 PE=1 SV=1
trembl
ID B9RZN3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1000010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07012: 41640-54016 , PASA_asmbl_07013: 54167-60754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000684_420 0.063260998 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_000645_150 0.0634843345 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000186_280 0.0638448287 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
5 Hb_001014_010 0.0651028128 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
6 Hb_000236_370 0.0663524135 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
7 Hb_003384_030 0.0668333069 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
8 Hb_003453_020 0.0681276704 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
9 Hb_000803_300 0.0685252889 - - nuclear movement protein nudc, putative [Ricinus communis]
10 Hb_000236_320 0.0704061374 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
11 Hb_005701_040 0.0707294612 - - cellular nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000001_180 0.0715396925 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
13 Hb_000265_150 0.0716318908 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
14 Hb_002097_090 0.0716534003 - - Splicing factor 3A subunit, putative [Ricinus communis]
15 Hb_005914_230 0.0760687749 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
16 Hb_004044_020 0.0763394926 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
17 Hb_000116_110 0.0766145833 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
18 Hb_028639_060 0.0768261041 - - transporter, putative [Ricinus communis]
19 Hb_002400_180 0.0769426238 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000139_250 0.0774803046 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]

Gene co-expression network

sample Hb_012305_070 Hb_012305_070 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030 Hb_000076_080 Hb_000076_080 Hb_000684_420--Hb_000076_080 Hb_002097_090 Hb_002097_090 Hb_000684_420--Hb_002097_090 Hb_000684_420--Hb_000186_280 Hb_002400_180 Hb_002400_180 Hb_000684_420--Hb_002400_180 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_000645_150--Hb_000236_370 Hb_000645_150--Hb_002097_090 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010 Hb_001969_040 Hb_001969_040 Hb_000186_280--Hb_001969_040 Hb_000186_280--Hb_002400_180 Hb_000186_280--Hb_000076_080 Hb_000803_300 Hb_000803_300 Hb_001014_010--Hb_000803_300 Hb_031939_010 Hb_031939_010 Hb_001014_010--Hb_031939_010 Hb_000699_130 Hb_000699_130 Hb_001014_010--Hb_000699_130 Hb_008887_050 Hb_008887_050 Hb_001014_010--Hb_008887_050 Hb_000085_060 Hb_000085_060 Hb_001014_010--Hb_000085_060 Hb_000236_370--Hb_002097_090 Hb_028639_060 Hb_028639_060 Hb_000236_370--Hb_028639_060 Hb_000956_030 Hb_000956_030 Hb_000236_370--Hb_000956_030 Hb_000236_370--Hb_000186_280 Hb_000001_180 Hb_000001_180 Hb_003384_030--Hb_000001_180 Hb_000462_150 Hb_000462_150 Hb_003384_030--Hb_000462_150 Hb_005914_230 Hb_005914_230 Hb_003384_030--Hb_005914_230 Hb_002818_040 Hb_002818_040 Hb_003384_030--Hb_002818_040 Hb_018663_020 Hb_018663_020 Hb_003384_030--Hb_018663_020 Hb_003384_030--Hb_001969_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.9508 27.952 16.8984 11.1369 70.052 68.1756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.6442 36.5237 27.065 17.154 10.6321

CAGE analysis