Hb_031939_010

Information

Type -
Description -
Location Contig31939: 3795-8356
Sequence    

Annotation

kegg
ID rcu:RCOM_0814070
description Coiled-coil domain-containing protein, putative
nr
ID XP_002518796.1
description Coiled-coil domain-containing protein, putative [Ricinus communis]
swissprot
ID Q54WR5
description Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1
trembl
ID B9RY29
description Coiled-coil domain-containing protein, putative OS=Ricinus communis GN=RCOM_0814070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33660: 3814-28241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031939_010 0.0 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
2 Hb_011942_080 0.0508779481 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
3 Hb_008887_050 0.0559994381 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
4 Hb_000290_020 0.0635078151 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
5 Hb_003044_100 0.063974511 - - hypothetical protein F383_08446 [Gossypium arboreum]
6 Hb_001014_010 0.0685101605 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
7 Hb_005245_130 0.0686742208 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
8 Hb_143629_010 0.0693911453 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_009265_080 0.0702116035 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
10 Hb_002007_350 0.0742077383 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
11 Hb_001369_180 0.0745829745 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
12 Hb_003406_010 0.0747293555 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
13 Hb_005503_030 0.0747316114 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
14 Hb_003849_060 0.0750105894 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
15 Hb_000358_250 0.0750527517 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
16 Hb_171900_100 0.0752820192 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
17 Hb_004044_020 0.0753550228 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
18 Hb_000085_060 0.0755858934 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
19 Hb_054865_100 0.0772401646 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
20 Hb_000803_300 0.0786804577 - - nuclear movement protein nudc, putative [Ricinus communis]

Gene co-expression network

sample Hb_031939_010 Hb_031939_010 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_008887_050 Hb_008887_050 Hb_031939_010--Hb_008887_050 Hb_000290_020 Hb_000290_020 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130 Hb_003467_010 Hb_003467_010 Hb_011942_080--Hb_003467_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_143629_010 Hb_143629_010 Hb_008887_050--Hb_143629_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_001047_100 Hb_001047_100 Hb_000290_020--Hb_001047_100 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_007026_030 Hb_007026_030 Hb_003044_100--Hb_007026_030 Hb_000012_020 Hb_000012_020 Hb_003044_100--Hb_000012_020 Hb_003044_100--Hb_000290_020 Hb_004198_010 Hb_004198_010 Hb_003044_100--Hb_004198_010 Hb_006064_010 Hb_006064_010 Hb_003044_100--Hb_006064_010 Hb_012305_070 Hb_012305_070 Hb_001014_010--Hb_012305_070 Hb_000803_300 Hb_000803_300 Hb_001014_010--Hb_000803_300 Hb_000699_130 Hb_000699_130 Hb_001014_010--Hb_000699_130 Hb_001014_010--Hb_008887_050 Hb_000085_060 Hb_000085_060 Hb_001014_010--Hb_000085_060 Hb_004934_090 Hb_004934_090 Hb_005245_130--Hb_004934_090 Hb_003406_010 Hb_003406_010 Hb_005245_130--Hb_003406_010 Hb_005245_130--Hb_000803_300 Hb_004096_030 Hb_004096_030 Hb_005245_130--Hb_004096_030 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.2394 28.7965 34.156 21.8954 78.3304 77.0232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.1609 48.8643 30.989 27.4737 18.4661

CAGE analysis