Hb_001047_100

Information

Type -
Description -
Location Contig1047: 66943-68885
Sequence    

Annotation

kegg
ID rcu:RCOM_0557270
description 40S ribosomal protein S18, putative
nr
ID XP_002520719.1
description 40S ribosomal protein S18, putative [Ricinus communis]
swissprot
ID P34788
description 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1
trembl
ID I3NMP4
description 40S ribosomal protein S18A OS=Hevea brasiliensis GN=RPS18A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01611: 66949-68968
cDNA
(Sanger)
(ID:Location)		 018_L14.ab1: 67140-68964 , 019_M16.ab1: 67192-68964 , 023_M12.ab1: 67236-68964 , 028_B08.ab1: 67360-68964 , 028_B12.ab1: 67305-68964 , 033_H13.ab1: 67119-68964 , 037_K19.ab1: 67194-68965

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_100 0.0 - - 40S ribosomal protein S18, putative [Ricinus communis]
2 Hb_105386_010 0.0453515219 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
3 Hb_003746_040 0.0578200948 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
4 Hb_000189_340 0.0629016872 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
5 Hb_000290_020 0.0645901058 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
6 Hb_001358_030 0.0746220167 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
7 Hb_001766_150 0.0764533598 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
8 Hb_000349_060 0.0772033315 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
9 Hb_011848_010 0.0799106465 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
10 Hb_012193_010 0.0817206522 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_031939_010 0.0837615212 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
12 Hb_005618_160 0.0839910162 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
13 Hb_000008_330 0.0855819814 - - 60S ribosomal protein L12A [Hevea brasiliensis]
14 Hb_000640_240 0.0875628341 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
15 Hb_003752_080 0.0877177699 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
16 Hb_011828_050 0.0884951899 - - 40S ribosomal protein S23, putative [Ricinus communis]
17 Hb_012092_010 0.0897523878 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
18 Hb_002233_150 0.0898205172 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
19 Hb_000099_240 0.0902806418 - - 60S ribosomal protein L7a, putative [Ricinus communis]
20 Hb_010128_130 0.0904513604 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001047_100 Hb_001047_100 Hb_105386_010 Hb_105386_010 Hb_001047_100--Hb_105386_010 Hb_003746_040 Hb_003746_040 Hb_001047_100--Hb_003746_040 Hb_000189_340 Hb_000189_340 Hb_001047_100--Hb_000189_340 Hb_000290_020 Hb_000290_020 Hb_001047_100--Hb_000290_020 Hb_001358_030 Hb_001358_030 Hb_001047_100--Hb_001358_030 Hb_001766_150 Hb_001766_150 Hb_001047_100--Hb_001766_150 Hb_105386_010--Hb_001358_030 Hb_105386_010--Hb_000189_340 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_105386_010--Hb_003746_040 Hb_011828_050 Hb_011828_050 Hb_003746_040--Hb_011828_050 Hb_043302_010 Hb_043302_010 Hb_003746_040--Hb_043302_010 Hb_010128_130 Hb_010128_130 Hb_003746_040--Hb_010128_130 Hb_003746_040--Hb_000290_020 Hb_000189_340--Hb_001766_150 Hb_000189_340--Hb_001358_030 Hb_009222_010 Hb_009222_010 Hb_000189_340--Hb_009222_010 Hb_142439_010 Hb_142439_010 Hb_000189_340--Hb_142439_010 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_010691_060 Hb_010691_060 Hb_001766_150--Hb_010691_060 Hb_003044_100 Hb_003044_100 Hb_001766_150--Hb_003044_100 Hb_000157_030 Hb_000157_030 Hb_001766_150--Hb_000157_030 Hb_001766_150--Hb_105386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
323.354 135.913 161.378 139.825 400.393 435.618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
235.339 379.95 138.278 149.275 62.3085

CAGE analysis