Hb_001766_150

Information

Type -
Description -
Location Contig1766: 137728-140479
Sequence    

Annotation

kegg
ID pda:103707954
description 40S ribosomal protein S6
nr
ID XP_012069155.1
description PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
swissprot
ID Q9M3V8
description 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1
trembl
ID A0A067L8U3
description 40S ribosomal protein S6 OS=Jatropha curcas GN=JCGZ_24919 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16941: 137859-140434
cDNA
(Sanger)
(ID:Location)		 033_A08.ab1: 138175-140428 , 044_N20.ab1: 138056-140195

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_150 0.0 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
2 Hb_000189_340 0.057509276 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
3 Hb_010691_060 0.070055958 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
4 Hb_001047_100 0.0764533598 - - 40S ribosomal protein S18, putative [Ricinus communis]
5 Hb_003044_100 0.079584232 - - hypothetical protein F383_08446 [Gossypium arboreum]
6 Hb_000157_030 0.0806219665 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
7 Hb_105386_010 0.0825188345 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
8 Hb_009222_010 0.0872605652 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_022693_120 0.0880108492 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
10 Hb_004198_010 0.0893273612 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
11 Hb_001358_030 0.0900357286 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
12 Hb_001405_120 0.0905376438 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
13 Hb_031939_010 0.0936730442 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_001789_240 0.0946529848 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
15 Hb_002107_160 0.0949082461 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
16 Hb_011942_080 0.0950626289 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
17 Hb_000349_060 0.0955940974 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_000956_030 0.09722717 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
19 Hb_002391_300 0.0981796875 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
20 Hb_027295_010 0.0988880543 - - 40S ribosomal protein S7, putative [Ricinus communis]

Gene co-expression network

sample Hb_001766_150 Hb_001766_150 Hb_000189_340 Hb_000189_340 Hb_001766_150--Hb_000189_340 Hb_010691_060 Hb_010691_060 Hb_001766_150--Hb_010691_060 Hb_001047_100 Hb_001047_100 Hb_001766_150--Hb_001047_100 Hb_003044_100 Hb_003044_100 Hb_001766_150--Hb_003044_100 Hb_000157_030 Hb_000157_030 Hb_001766_150--Hb_000157_030 Hb_105386_010 Hb_105386_010 Hb_001766_150--Hb_105386_010 Hb_000189_340--Hb_001047_100 Hb_000189_340--Hb_105386_010 Hb_001358_030 Hb_001358_030 Hb_000189_340--Hb_001358_030 Hb_009222_010 Hb_009222_010 Hb_000189_340--Hb_009222_010 Hb_142439_010 Hb_142439_010 Hb_000189_340--Hb_142439_010 Hb_010691_060--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_010691_060--Hb_003266_050 Hb_185830_020 Hb_185830_020 Hb_010691_060--Hb_185830_020 Hb_002391_300 Hb_002391_300 Hb_010691_060--Hb_002391_300 Hb_003058_130 Hb_003058_130 Hb_010691_060--Hb_003058_130 Hb_001047_100--Hb_105386_010 Hb_003746_040 Hb_003746_040 Hb_001047_100--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_001047_100--Hb_000290_020 Hb_001047_100--Hb_001358_030 Hb_031939_010 Hb_031939_010 Hb_003044_100--Hb_031939_010 Hb_007026_030 Hb_007026_030 Hb_003044_100--Hb_007026_030 Hb_000012_020 Hb_000012_020 Hb_003044_100--Hb_000012_020 Hb_003044_100--Hb_000290_020 Hb_004198_010 Hb_004198_010 Hb_003044_100--Hb_004198_010 Hb_006064_010 Hb_006064_010 Hb_003044_100--Hb_006064_010 Hb_002107_160 Hb_002107_160 Hb_000157_030--Hb_002107_160 Hb_000157_030--Hb_002391_300 Hb_004440_050 Hb_004440_050 Hb_000157_030--Hb_004440_050 Hb_000157_030--Hb_003266_050 Hb_105386_010--Hb_001358_030 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_105386_010--Hb_003746_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
268.638 100.309 151.38 93.0387 228.985 410.294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
189.358 255.405 103.79 145.409 64.705

CAGE analysis