Hb_004198_010

Information

Type -
Description -
Location Contig4198: 5918-17265
Sequence    

Annotation

kegg
ID tcc:TCM_024370
description Eukaryotic translation initiation factor 2 subunit beta
nr
ID XP_007028531.1
description Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
swissprot
ID P55871
description Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2
trembl
ID A0A061EWJ4
description Eukaryotic translation initiation factor 2 subunit beta OS=Theobroma cacao GN=TCM_024370 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 2 subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41448: 5866-17295
cDNA
(Sanger)
(ID:Location)		 046_B09.ab1: 5866-12638

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004198_010 0.0 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
2 Hb_000956_030 0.0443645158 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
3 Hb_003434_060 0.0593342178 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
4 Hb_000364_060 0.0697911679 - - JHL03K20.4 [Jatropha curcas]
5 Hb_000120_500 0.0715997447 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
6 Hb_004450_010 0.0768379343 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
7 Hb_003044_100 0.0786774411 - - hypothetical protein F383_08446 [Gossypium arboreum]
8 Hb_002272_180 0.0814755156 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
9 Hb_004044_020 0.0818028343 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
10 Hb_002174_060 0.0821244257 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
11 Hb_007668_040 0.0823987297 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
12 Hb_004195_280 0.082602269 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
13 Hb_031939_010 0.0827572549 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_001341_050 0.0832065291 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
15 Hb_004204_200 0.0838036661 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
16 Hb_000390_060 0.0856427662 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
17 Hb_005883_050 0.0869512991 - - PREDICTED: transportin-3 [Jatropha curcas]
18 Hb_023001_050 0.0877595914 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
19 Hb_010222_030 0.0885935733 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
20 Hb_002149_020 0.0886915793 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004198_010 Hb_004198_010 Hb_000956_030 Hb_000956_030 Hb_004198_010--Hb_000956_030 Hb_003434_060 Hb_003434_060 Hb_004198_010--Hb_003434_060 Hb_000364_060 Hb_000364_060 Hb_004198_010--Hb_000364_060 Hb_000120_500 Hb_000120_500 Hb_004198_010--Hb_000120_500 Hb_004450_010 Hb_004450_010 Hb_004198_010--Hb_004450_010 Hb_003044_100 Hb_003044_100 Hb_004198_010--Hb_003044_100 Hb_000956_030--Hb_003434_060 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_003434_060--Hb_000120_500 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_002174_060 Hb_002174_060 Hb_000364_060--Hb_002174_060 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_000364_060--Hb_004450_010 Hb_000120_500--Hb_000390_060 Hb_000120_500--Hb_005883_050 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_002044_060 Hb_002044_060 Hb_004450_010--Hb_002044_060 Hb_000768_110 Hb_000768_110 Hb_004450_010--Hb_000768_110 Hb_004370_030 Hb_004370_030 Hb_004450_010--Hb_004370_030 Hb_004450_010--Hb_002272_180 Hb_001221_040 Hb_001221_040 Hb_004450_010--Hb_001221_040 Hb_031939_010 Hb_031939_010 Hb_003044_100--Hb_031939_010 Hb_007026_030 Hb_007026_030 Hb_003044_100--Hb_007026_030 Hb_000012_020 Hb_000012_020 Hb_003044_100--Hb_000012_020 Hb_000290_020 Hb_000290_020 Hb_003044_100--Hb_000290_020 Hb_006064_010 Hb_006064_010 Hb_003044_100--Hb_006064_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4887 13.7879 15.9773 18.8292 51.0921 68.206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8879 30.7714 21.8484 20.2117 11.2433

CAGE analysis