Hb_001341_050

Information

Type -
Description -
Location Contig1341: 58209-61273
Sequence    

Annotation

kegg
ID tcc:TCM_043082
description ATP synthase D chain, mitochondrial
nr
ID XP_007009739.1
description ATP synthase D chain, mitochondrial [Theobroma cacao]
swissprot
ID Q9FT52
description ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3
trembl
ID A0A061FUR0
description ATP synthase D chain, mitochondrial OS=Theobroma cacao GN=TCM_043082 PE=4 SV=1
Gene Ontology
ID GO:0000276
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09686: 59653-60196 , PASA_asmbl_09687: 58345-61131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_050 0.0 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
2 Hb_007668_040 0.0685706339 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
3 Hb_000364_060 0.0718431299 - - JHL03K20.4 [Jatropha curcas]
4 Hb_002942_080 0.0814059996 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
5 Hb_004198_010 0.0832065291 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
6 Hb_003434_060 0.0841094265 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
7 Hb_010423_020 0.0865712471 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
8 Hb_004881_050 0.0881936174 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
9 Hb_012132_040 0.0892444224 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
10 Hb_000956_030 0.0897032775 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
11 Hb_005368_010 0.090706967 - - PREDICTED: umecyanin-like [Jatropha curcas]
12 Hb_004195_280 0.0914303413 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
13 Hb_000372_040 0.0917997187 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000424_230 0.0952873769 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
15 Hb_079326_010 0.0954490325 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
16 Hb_003006_060 0.0959263578 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
17 Hb_009775_050 0.096046222 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
18 Hb_000120_500 0.0973953794 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
19 Hb_000176_110 0.0977586443 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
20 Hb_009265_080 0.0988384772 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001341_050 Hb_001341_050 Hb_007668_040 Hb_007668_040 Hb_001341_050--Hb_007668_040 Hb_000364_060 Hb_000364_060 Hb_001341_050--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_001341_050--Hb_002942_080 Hb_004198_010 Hb_004198_010 Hb_001341_050--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_001341_050--Hb_003434_060 Hb_010423_020 Hb_010423_020 Hb_001341_050--Hb_010423_020 Hb_007668_040--Hb_002942_080 Hb_012132_040 Hb_012132_040 Hb_007668_040--Hb_012132_040 Hb_007668_040--Hb_000364_060 Hb_024990_010 Hb_024990_010 Hb_007668_040--Hb_024990_010 Hb_003006_060 Hb_003006_060 Hb_007668_040--Hb_003006_060 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_002174_060 Hb_002174_060 Hb_000364_060--Hb_002174_060 Hb_000364_060--Hb_004198_010 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_009913_050 Hb_009913_050 Hb_002942_080--Hb_009913_050 Hb_002942_080--Hb_003006_060 Hb_002675_060 Hb_002675_060 Hb_002942_080--Hb_002675_060 Hb_005214_060 Hb_005214_060 Hb_002942_080--Hb_005214_060 Hb_002942_080--Hb_024990_010 Hb_000956_030 Hb_000956_030 Hb_004198_010--Hb_000956_030 Hb_004198_010--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_004198_010--Hb_000120_500 Hb_004198_010--Hb_004450_010 Hb_003044_100 Hb_003044_100 Hb_004198_010--Hb_003044_100 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_003434_060--Hb_000956_030 Hb_003434_060--Hb_000120_500 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_004195_280 Hb_004195_280 Hb_010423_020--Hb_004195_280 Hb_010423_020--Hb_002174_060 Hb_010423_020--Hb_003006_060 Hb_009265_080 Hb_009265_080 Hb_010423_020--Hb_009265_080 Hb_010423_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_010423_020--Hb_134364_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.7568 6.57383 13.8114 11.0069 33.1848 52.5904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7628 12.9961 13.4499 12.6161 6.92542

CAGE analysis