Hb_010423_020

Information

Type -
Description -
Location Contig10423: 22519-26195
Sequence    

Annotation

kegg
ID rcu:RCOM_0820860
description expressed protein, putative
nr
ID XP_012082641.1
description PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
swissprot
ID Q9DBF7
description Pre-mRNA-splicing factor CWC25 homolog OS=Mus musculus GN=Cwc25 PE=2 SV=2
trembl
ID A0A067K1M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19521 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01553: 22655-26080 , PASA_asmbl_01554: 23075-23356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010423_020 0.0 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
2 Hb_004195_280 0.0543697793 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
3 Hb_002174_060 0.0685733526 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
4 Hb_003006_060 0.0708745788 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
5 Hb_009265_080 0.0710225031 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
6 Hb_000364_060 0.0768470409 - - JHL03K20.4 [Jatropha curcas]
7 Hb_134364_010 0.0850070736 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
8 Hb_000789_080 0.0863581917 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
9 Hb_007668_040 0.0864025765 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
10 Hb_001341_050 0.0865712471 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
11 Hb_007407_040 0.0870129845 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_152079_010 0.087835661 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
13 Hb_002893_150 0.0887524388 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
14 Hb_024990_010 0.0889336795 - - PREDICTED: la protein 1 [Jatropha curcas]
15 Hb_000696_300 0.0894161577 - - hypothetical protein EUGRSUZ_J01717 [Eucalyptus grandis]
16 Hb_002942_080 0.0897242904 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
17 Hb_000640_320 0.0898005992 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
18 Hb_000523_090 0.089876672 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
19 Hb_000531_090 0.0900795951 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
20 Hb_000046_440 0.0906497532 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010423_020 Hb_010423_020 Hb_004195_280 Hb_004195_280 Hb_010423_020--Hb_004195_280 Hb_002174_060 Hb_002174_060 Hb_010423_020--Hb_002174_060 Hb_003006_060 Hb_003006_060 Hb_010423_020--Hb_003006_060 Hb_009265_080 Hb_009265_080 Hb_010423_020--Hb_009265_080 Hb_000364_060 Hb_000364_060 Hb_010423_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_010423_020--Hb_134364_010 Hb_004195_280--Hb_002174_060 Hb_004195_280--Hb_009265_080 Hb_171900_100 Hb_171900_100 Hb_004195_280--Hb_171900_100 Hb_004195_280--Hb_003006_060 Hb_000179_020 Hb_000179_020 Hb_004195_280--Hb_000179_020 Hb_002174_060--Hb_000179_020 Hb_002174_060--Hb_000364_060 Hb_001866_110 Hb_001866_110 Hb_002174_060--Hb_001866_110 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110 Hb_002942_080 Hb_002942_080 Hb_003006_060--Hb_002942_080 Hb_004678_060 Hb_004678_060 Hb_003006_060--Hb_004678_060 Hb_000104_080 Hb_000104_080 Hb_003006_060--Hb_000104_080 Hb_008143_030 Hb_008143_030 Hb_003006_060--Hb_008143_030 Hb_003006_060--Hb_009265_080 Hb_002007_350 Hb_002007_350 Hb_009265_080--Hb_002007_350 Hb_008253_010 Hb_008253_010 Hb_009265_080--Hb_008253_010 Hb_009265_080--Hb_004678_060 Hb_002400_180 Hb_002400_180 Hb_009265_080--Hb_002400_180 Hb_000803_300 Hb_000803_300 Hb_009265_080--Hb_000803_300 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_004198_010 Hb_004198_010 Hb_000364_060--Hb_004198_010 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_134364_010--Hb_008253_010 Hb_001863_260 Hb_001863_260 Hb_134364_010--Hb_001863_260 Hb_000364_080 Hb_000364_080 Hb_134364_010--Hb_000364_080 Hb_134364_010--Hb_009265_080 Hb_002942_160 Hb_002942_160 Hb_134364_010--Hb_002942_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.164 27.2616 35.9485 20.5937 83.166 133.554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.2424 33.5064 36.9731 37.9144 38.1273

CAGE analysis