Hb_001866_110

Information

Type -
Description -
Location Contig1866: 113124-113735
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01210g
description hypothetical protein
nr
ID XP_012070490.1
description PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
swissprot
ID O80450
description Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1
trembl
ID A0A067KU78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02761 PE=4 SV=1
Gene Ontology
ID GO:0005634
description trihelix transcription factor gt-3b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18435: 82045-114159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001866_110 0.0 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
2 Hb_000429_120 0.0675511175 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
3 Hb_005977_090 0.0694455313 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
4 Hb_000179_020 0.0731441454 - - amidase, putative [Ricinus communis]
5 Hb_002174_060 0.0738312478 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
6 Hb_003428_070 0.0749780714 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
7 Hb_000889_020 0.0762794476 - - ribosome biogenesis protein brix, putative [Ricinus communis]
8 Hb_004619_050 0.0772296813 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
9 Hb_004934_090 0.0776479864 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
10 Hb_000025_110 0.0789651635 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
11 Hb_000522_090 0.0793499902 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
12 Hb_007192_080 0.0805542396 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
13 Hb_002150_030 0.0809162111 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
14 Hb_004447_060 0.0813953535 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
15 Hb_000567_050 0.0816176068 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
16 Hb_028487_110 0.0820070465 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
17 Hb_012490_030 0.0822293709 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
18 Hb_000316_030 0.0823150174 - - zinc finger protein, putative [Ricinus communis]
19 Hb_016898_010 0.0823636695 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
20 Hb_000373_240 0.0823646584 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001866_110 Hb_001866_110 Hb_000429_120 Hb_000429_120 Hb_001866_110--Hb_000429_120 Hb_005977_090 Hb_005977_090 Hb_001866_110--Hb_005977_090 Hb_000179_020 Hb_000179_020 Hb_001866_110--Hb_000179_020 Hb_002174_060 Hb_002174_060 Hb_001866_110--Hb_002174_060 Hb_003428_070 Hb_003428_070 Hb_001866_110--Hb_003428_070 Hb_000889_020 Hb_000889_020 Hb_001866_110--Hb_000889_020 Hb_002027_270 Hb_002027_270 Hb_000429_120--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_000429_120--Hb_004619_050 Hb_000046_440 Hb_000046_440 Hb_000429_120--Hb_000046_440 Hb_016898_010 Hb_016898_010 Hb_000429_120--Hb_016898_010 Hb_028487_110 Hb_028487_110 Hb_000429_120--Hb_028487_110 Hb_005977_090--Hb_028487_110 Hb_001638_250 Hb_001638_250 Hb_005977_090--Hb_001638_250 Hb_007586_030 Hb_007586_030 Hb_005977_090--Hb_007586_030 Hb_000803_300 Hb_000803_300 Hb_005977_090--Hb_000803_300 Hb_000522_090 Hb_000522_090 Hb_005977_090--Hb_000522_090 Hb_011794_060 Hb_011794_060 Hb_000179_020--Hb_011794_060 Hb_000179_020--Hb_002174_060 Hb_002079_010 Hb_002079_010 Hb_000179_020--Hb_002079_010 Hb_000179_020--Hb_000889_020 Hb_004195_280 Hb_004195_280 Hb_000179_020--Hb_004195_280 Hb_002174_060--Hb_004195_280 Hb_000364_060 Hb_000364_060 Hb_002174_060--Hb_000364_060 Hb_010423_020 Hb_010423_020 Hb_002174_060--Hb_010423_020 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_000889_020--Hb_011794_060 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2928 9.19475 4.88036 7.23301 20.4207 28.3968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.395 11.7914 11.8957 10.102 10.1735

CAGE analysis