Hb_007218_080

Information

Type -
Description -
Location Contig7218: 91382-108456
Sequence    

Annotation

kegg
ID pop:POPTR_0001s19200g
description POPTRDRAFT_1067679; hypothetical protein
nr
ID XP_012069057.1
description PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
swissprot
ID Q9KGG1
description DNA repair protein RadA homolog OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=radA PE=3 SV=1
trembl
ID A0A067L8L6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24839 PE=4 SV=1
Gene Ontology
ID GO:0000166
description atp-dependent -type dna -triphosphatases isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55671: 91614-94503 , PASA_asmbl_55672: 94784-104146 , PASA_asmbl_55673: 95341-104040 , PASA_asmbl_55675: 104996-108351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_080 0.0 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
2 Hb_004310_130 0.0440197687 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
3 Hb_001369_180 0.0578598983 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
4 Hb_150360_030 0.0579723822 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
5 Hb_003406_010 0.0631120711 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
6 Hb_002391_300 0.0632088562 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
7 Hb_003030_070 0.0673552921 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
8 Hb_007894_140 0.0691728785 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
9 Hb_000889_020 0.0692018677 - - ribosome biogenesis protein brix, putative [Ricinus communis]
10 Hb_001006_140 0.0694020268 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
11 Hb_000373_240 0.0697968656 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
12 Hb_000853_170 0.0702428556 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
13 Hb_001635_170 0.070284007 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
14 Hb_000645_050 0.0705108021 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
15 Hb_011689_080 0.070803556 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
16 Hb_003010_030 0.0717695048 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
17 Hb_000926_280 0.0730224636 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
18 Hb_000058_100 0.0731698798 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
19 Hb_004724_200 0.0732381924 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
20 Hb_015746_010 0.0732981521 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_007218_080 Hb_007218_080 Hb_004310_130 Hb_004310_130 Hb_007218_080--Hb_004310_130 Hb_001369_180 Hb_001369_180 Hb_007218_080--Hb_001369_180 Hb_150360_030 Hb_150360_030 Hb_007218_080--Hb_150360_030 Hb_003406_010 Hb_003406_010 Hb_007218_080--Hb_003406_010 Hb_002391_300 Hb_002391_300 Hb_007218_080--Hb_002391_300 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070 Hb_004310_130--Hb_150360_030 Hb_004310_130--Hb_001369_180 Hb_000086_380 Hb_000086_380 Hb_004310_130--Hb_000086_380 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330 Hb_001369_180--Hb_003030_070 Hb_000230_560 Hb_000230_560 Hb_001369_180--Hb_000230_560 Hb_002495_040 Hb_002495_040 Hb_001369_180--Hb_002495_040 Hb_007336_020 Hb_007336_020 Hb_001369_180--Hb_007336_020 Hb_000053_130 Hb_000053_130 Hb_150360_030--Hb_000053_130 Hb_150360_030--Hb_001635_170 Hb_150360_030--Hb_001369_180 Hb_000076_120 Hb_000076_120 Hb_150360_030--Hb_000076_120 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_003406_010--Hb_002391_300 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_003665_060 Hb_003665_060 Hb_003030_070--Hb_003665_060 Hb_003030_070--Hb_000230_560 Hb_003030_070--Hb_002495_040 Hb_007317_110 Hb_007317_110 Hb_003030_070--Hb_007317_110 Hb_003030_070--Hb_002391_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2951 4.89948 4.69752 5.26322 11.1367 13.3658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5794 10.0307 7.25337 6.00425 4.91475

CAGE analysis