Hb_150360_030

Information

Type -
Description -
Location Contig150360: 6147-9988
Sequence    

Annotation

kegg
ID rcu:RCOM_0962810
description F-box and wd40 domain protein, putative
nr
ID XP_012065623.1
description PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
swissprot
ID Q9SV01
description F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2
trembl
ID B9RVI4
description F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_0962810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12618: 6191-8705 , PASA_asmbl_12620: 6336-9544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150360_030 0.0 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
2 Hb_004310_130 0.0469121903 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
3 Hb_007218_080 0.0579723822 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
4 Hb_000053_130 0.0694852829 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
5 Hb_001635_170 0.0706363817 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
6 Hb_001369_180 0.0720449107 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
7 Hb_000076_120 0.0736236401 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
8 Hb_011689_080 0.074267088 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
9 Hb_001124_120 0.075186765 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
10 Hb_003406_010 0.0759311741 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
11 Hb_006922_100 0.0770473487 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
12 Hb_000465_430 0.0786747203 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
13 Hb_004055_030 0.0788568377 - - casein kinase, putative [Ricinus communis]
14 Hb_000058_100 0.0796935322 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
15 Hb_003030_070 0.0799105197 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
16 Hb_000645_050 0.0806250765 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
17 Hb_002349_040 0.0813215135 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
18 Hb_000853_170 0.0822493424 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
19 Hb_000092_100 0.0822581969 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
20 Hb_002495_040 0.0823247334 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_150360_030 Hb_150360_030 Hb_004310_130 Hb_004310_130 Hb_150360_030--Hb_004310_130 Hb_007218_080 Hb_007218_080 Hb_150360_030--Hb_007218_080 Hb_000053_130 Hb_000053_130 Hb_150360_030--Hb_000053_130 Hb_001635_170 Hb_001635_170 Hb_150360_030--Hb_001635_170 Hb_001369_180 Hb_001369_180 Hb_150360_030--Hb_001369_180 Hb_000076_120 Hb_000076_120 Hb_150360_030--Hb_000076_120 Hb_004310_130--Hb_007218_080 Hb_004310_130--Hb_001369_180 Hb_000086_380 Hb_000086_380 Hb_004310_130--Hb_000086_380 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330 Hb_007218_080--Hb_001369_180 Hb_003406_010 Hb_003406_010 Hb_007218_080--Hb_003406_010 Hb_002391_300 Hb_002391_300 Hb_007218_080--Hb_002391_300 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070 Hb_000053_130--Hb_000076_120 Hb_000058_100 Hb_000058_100 Hb_000053_130--Hb_000058_100 Hb_054865_120 Hb_054865_120 Hb_000053_130--Hb_054865_120 Hb_000299_040 Hb_000299_040 Hb_000053_130--Hb_000299_040 Hb_000094_300 Hb_000094_300 Hb_000053_130--Hb_000094_300 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_001369_180--Hb_003030_070 Hb_000230_560 Hb_000230_560 Hb_001369_180--Hb_000230_560 Hb_002495_040 Hb_002495_040 Hb_001369_180--Hb_002495_040 Hb_007336_020 Hb_007336_020 Hb_001369_180--Hb_007336_020 Hb_000076_120--Hb_000058_100 Hb_000926_280 Hb_000926_280 Hb_000076_120--Hb_000926_280 Hb_000076_120--Hb_004310_130 Hb_000076_120--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.4938 32.0046 37.3192 31.1904 66.3278 77.5827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.188 51.6168 44.6013 31.3619 25.3119

CAGE analysis