Hb_000058_100

Information

Type -
Description -
Location Contig58: 174277-180269
Sequence    

Annotation

kegg
ID rcu:RCOM_1710590
description hypothetical protein
nr
ID XP_012078837.1
description PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
swissprot
ID Q8GYP3
description RNA-directed DNA methylation 4 OS=Arabidopsis thaliana GN=RDM4 PE=1 SV=1
trembl
ID A0A067LBL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17374 PE=4 SV=1
Gene Ontology
ID GO:0006355
description rna-directed dna methylation 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49809: 174307-180207 , PASA_asmbl_49810: 174307-178811 , PASA_asmbl_49811: 175453-176046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_100 0.0 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
2 Hb_001199_020 0.0573202515 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
3 Hb_003813_130 0.0694929014 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
4 Hb_000076_120 0.069599841 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
5 Hb_027472_150 0.0697350398 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
6 Hb_004055_030 0.0700374341 - - casein kinase, putative [Ricinus communis]
7 Hb_004310_130 0.0707579462 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
8 Hb_002728_070 0.0722960454 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
9 Hb_007218_080 0.0731698798 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
10 Hb_001006_140 0.0743194108 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
11 Hb_000025_470 0.075245823 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
12 Hb_001579_320 0.0756383083 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
13 Hb_006827_020 0.0762781735 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000291_220 0.0766105879 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
15 Hb_000926_280 0.0766625287 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
16 Hb_001946_010 0.0770750286 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_002391_300 0.0772962077 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
18 Hb_000011_200 0.0773743658 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
19 Hb_009467_060 0.0774724409 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
20 Hb_020719_030 0.0786719111 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000058_100 Hb_000058_100 Hb_001199_020 Hb_001199_020 Hb_000058_100--Hb_001199_020 Hb_003813_130 Hb_003813_130 Hb_000058_100--Hb_003813_130 Hb_000076_120 Hb_000076_120 Hb_000058_100--Hb_000076_120 Hb_027472_150 Hb_027472_150 Hb_000058_100--Hb_027472_150 Hb_004055_030 Hb_004055_030 Hb_000058_100--Hb_004055_030 Hb_004310_130 Hb_004310_130 Hb_000058_100--Hb_004310_130 Hb_001006_140 Hb_001006_140 Hb_001199_020--Hb_001006_140 Hb_004724_200 Hb_004724_200 Hb_001199_020--Hb_004724_200 Hb_007441_120 Hb_007441_120 Hb_001199_020--Hb_007441_120 Hb_006922_100 Hb_006922_100 Hb_001199_020--Hb_006922_100 Hb_001199_020--Hb_004055_030 Hb_006827_020 Hb_006827_020 Hb_003813_130--Hb_006827_020 Hb_011930_160 Hb_011930_160 Hb_003813_130--Hb_011930_160 Hb_103012_010 Hb_103012_010 Hb_003813_130--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_003813_130--Hb_001946_010 Hb_000523_050 Hb_000523_050 Hb_003813_130--Hb_000523_050 Hb_003813_130--Hb_004055_030 Hb_000926_280 Hb_000926_280 Hb_000076_120--Hb_000926_280 Hb_000076_120--Hb_004310_130 Hb_000053_130 Hb_000053_130 Hb_000076_120--Hb_000053_130 Hb_150360_030 Hb_150360_030 Hb_000076_120--Hb_150360_030 Hb_007218_080 Hb_007218_080 Hb_000076_120--Hb_007218_080 Hb_004970_110 Hb_004970_110 Hb_027472_150--Hb_004970_110 Hb_002728_070 Hb_002728_070 Hb_027472_150--Hb_002728_070 Hb_001579_220 Hb_001579_220 Hb_027472_150--Hb_001579_220 Hb_002473_130 Hb_002473_130 Hb_027472_150--Hb_002473_130 Hb_000086_380 Hb_000086_380 Hb_027472_150--Hb_000086_380 Hb_004055_030--Hb_006922_100 Hb_004055_030--Hb_007441_120 Hb_001124_160 Hb_001124_160 Hb_004055_030--Hb_001124_160 Hb_000445_420 Hb_000445_420 Hb_004055_030--Hb_000445_420 Hb_004310_130--Hb_007218_080 Hb_004310_130--Hb_150360_030 Hb_001369_180 Hb_001369_180 Hb_004310_130--Hb_001369_180 Hb_004310_130--Hb_000086_380 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1755 7.8518 12.3804 10.1181 23.1226 25.4807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8874 15.9406 15.7027 16.96 10.4889

CAGE analysis