Hb_001199_020

Information

Type -
Description -
Location Contig1199: 41232-45645
Sequence    

Annotation

kegg
ID rcu:RCOM_0446280
description Ubiquitin ligase SINAT2, putative
nr
ID KDP24649.1
description hypothetical protein JCGZ_25565 [Jatropha curcas]
swissprot
ID Q9M2P4
description E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1
trembl
ID A0A067JYP2
description E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_25565 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sinat2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05954: 41403-45631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001199_020 0.0 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
2 Hb_000058_100 0.0573202515 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
3 Hb_001006_140 0.062909047 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
4 Hb_004724_200 0.0665026581 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
5 Hb_007441_120 0.0669215366 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
6 Hb_006922_100 0.0682524761 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
7 Hb_004055_030 0.0698951103 - - casein kinase, putative [Ricinus communis]
8 Hb_009467_060 0.0700981793 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
9 Hb_006400_060 0.0732059751 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
10 Hb_007218_080 0.0757486704 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
11 Hb_004109_090 0.0785667917 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_002030_030 0.0789865893 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
13 Hb_015746_010 0.0791412621 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
14 Hb_005663_060 0.0792160572 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
15 Hb_000483_200 0.0801601383 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
16 Hb_007044_140 0.0806726065 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
17 Hb_027472_150 0.0810290577 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
18 Hb_002079_010 0.0811622044 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
19 Hb_007044_080 0.0823268943 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
20 Hb_003813_130 0.082338905 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001199_020 Hb_001199_020 Hb_000058_100 Hb_000058_100 Hb_001199_020--Hb_000058_100 Hb_001006_140 Hb_001006_140 Hb_001199_020--Hb_001006_140 Hb_004724_200 Hb_004724_200 Hb_001199_020--Hb_004724_200 Hb_007441_120 Hb_007441_120 Hb_001199_020--Hb_007441_120 Hb_006922_100 Hb_006922_100 Hb_001199_020--Hb_006922_100 Hb_004055_030 Hb_004055_030 Hb_001199_020--Hb_004055_030 Hb_003813_130 Hb_003813_130 Hb_000058_100--Hb_003813_130 Hb_000076_120 Hb_000076_120 Hb_000058_100--Hb_000076_120 Hb_027472_150 Hb_027472_150 Hb_000058_100--Hb_027472_150 Hb_000058_100--Hb_004055_030 Hb_004310_130 Hb_004310_130 Hb_000058_100--Hb_004310_130 Hb_000051_070 Hb_000051_070 Hb_001006_140--Hb_000051_070 Hb_000038_170 Hb_000038_170 Hb_001006_140--Hb_000038_170 Hb_000120_790 Hb_000120_790 Hb_001006_140--Hb_000120_790 Hb_003952_070 Hb_003952_070 Hb_001006_140--Hb_003952_070 Hb_002518_280 Hb_002518_280 Hb_001006_140--Hb_002518_280 Hb_002030_030 Hb_002030_030 Hb_004724_200--Hb_002030_030 Hb_002811_360 Hb_002811_360 Hb_004724_200--Hb_002811_360 Hb_001301_200 Hb_001301_200 Hb_004724_200--Hb_001301_200 Hb_048937_040 Hb_048937_040 Hb_004724_200--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_004724_200--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_007441_120--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_000445_420 Hb_000445_420 Hb_007441_120--Hb_000445_420 Hb_007441_120--Hb_004055_030 Hb_007441_120--Hb_006922_100 Hb_006922_100--Hb_005663_060 Hb_006922_100--Hb_004055_030 Hb_000020_190 Hb_000020_190 Hb_006922_100--Hb_000020_190 Hb_001862_190 Hb_001862_190 Hb_006922_100--Hb_001862_190 Hb_001124_160 Hb_001124_160 Hb_004055_030--Hb_001124_160 Hb_004055_030--Hb_003813_130 Hb_004055_030--Hb_000445_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4416 6.69792 6.995 8.2388 19.4627 18.3905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0513 12.5372 16.0678 11.4318 9.1656

CAGE analysis