Hb_002030_030

Information

Type -
Description -
Location Contig2030: 63028-70811
Sequence    

Annotation

kegg
ID rcu:RCOM_0408960
description hypothetical protein
nr
ID XP_012081638.1
description PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
swissprot
ID Q8S8F8
description GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1
trembl
ID A0A067KD58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18679 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20819: 48944-70599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_030 0.0 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
2 Hb_003728_030 0.0515223328 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
3 Hb_004724_200 0.0527122349 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
4 Hb_000134_090 0.0581926486 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
5 Hb_004934_090 0.0601094442 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
6 Hb_033642_010 0.0601883552 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
7 Hb_002079_010 0.0628707041 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
8 Hb_004204_020 0.0634063193 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
9 Hb_004096_030 0.0687761489 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
10 Hb_000062_240 0.0692037844 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
11 Hb_028639_060 0.0694222404 - - transporter, putative [Ricinus communis]
12 Hb_000803_300 0.0702552181 - - nuclear movement protein nudc, putative [Ricinus communis]
13 Hb_003994_240 0.0706854829 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
14 Hb_005245_130 0.0717182219 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
15 Hb_006922_100 0.0731999755 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
16 Hb_000522_090 0.07373164 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
17 Hb_007218_080 0.0741077831 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
18 Hb_028872_140 0.0744846683 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
19 Hb_005977_090 0.075575925 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
20 Hb_002811_360 0.0765073756 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002030_030 Hb_002030_030 Hb_003728_030 Hb_003728_030 Hb_002030_030--Hb_003728_030 Hb_004724_200 Hb_004724_200 Hb_002030_030--Hb_004724_200 Hb_000134_090 Hb_000134_090 Hb_002030_030--Hb_000134_090 Hb_004934_090 Hb_004934_090 Hb_002030_030--Hb_004934_090 Hb_033642_010 Hb_033642_010 Hb_002030_030--Hb_033642_010 Hb_002079_010 Hb_002079_010 Hb_002030_030--Hb_002079_010 Hb_000483_360 Hb_000483_360 Hb_003728_030--Hb_000483_360 Hb_000556_020 Hb_000556_020 Hb_003728_030--Hb_000556_020 Hb_003994_240 Hb_003994_240 Hb_003728_030--Hb_003994_240 Hb_000300_280 Hb_000300_280 Hb_003728_030--Hb_000300_280 Hb_001811_150 Hb_001811_150 Hb_003728_030--Hb_001811_150 Hb_002811_360 Hb_002811_360 Hb_004724_200--Hb_002811_360 Hb_001301_200 Hb_001301_200 Hb_004724_200--Hb_001301_200 Hb_048937_040 Hb_048937_040 Hb_004724_200--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_004724_200--Hb_004109_090 Hb_001199_020 Hb_001199_020 Hb_004724_200--Hb_001199_020 Hb_001862_190 Hb_001862_190 Hb_000134_090--Hb_001862_190 Hb_004096_030 Hb_004096_030 Hb_000134_090--Hb_004096_030 Hb_000134_090--Hb_004934_090 Hb_006922_100 Hb_006922_100 Hb_000134_090--Hb_006922_100 Hb_000134_090--Hb_004724_200 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_004934_090--Hb_003994_240 Hb_028872_140 Hb_028872_140 Hb_033642_010--Hb_028872_140 Hb_009111_050 Hb_009111_050 Hb_033642_010--Hb_009111_050 Hb_001720_050 Hb_001720_050 Hb_033642_010--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_033642_010--Hb_000062_240 Hb_003777_270 Hb_003777_270 Hb_033642_010--Hb_003777_270 Hb_000103_180 Hb_000103_180 Hb_002079_010--Hb_000103_180 Hb_007426_030 Hb_007426_030 Hb_002079_010--Hb_007426_030 Hb_006400_060 Hb_006400_060 Hb_002079_010--Hb_006400_060 Hb_063090_010 Hb_063090_010 Hb_002079_010--Hb_063090_010 Hb_000179_020 Hb_000179_020 Hb_002079_010--Hb_000179_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4991 22.2689 13.3852 13.9675 44.0995 56.5651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.3656 29.6704 36.5786 26.476 15.8568

CAGE analysis