Hb_000483_360

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig483: 316038-322779
Sequence    

Annotation

kegg
ID rcu:RCOM_0120660
description GATA transcription factor, putative
nr
ID XP_012070091.1
description PREDICTED: GATA transcription factor 26 [Jatropha curcas]
swissprot
ID Q8W4H1
description GATA transcription factor 26 OS=Arabidopsis thaliana GN=GATA26 PE=2 SV=1
trembl
ID A0A067L760
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03475 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44832: 316037-322752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_360 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
2 Hb_003728_030 0.0598424718 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
3 Hb_005539_030 0.0603404636 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
4 Hb_001936_020 0.0658552212 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
5 Hb_000556_020 0.0736634234 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
6 Hb_005215_030 0.0747453245 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
7 Hb_000300_280 0.0784299101 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
8 Hb_000879_140 0.0824406114 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
9 Hb_002030_030 0.0832464333 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
10 Hb_000260_220 0.0866850033 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_007894_140 0.088894567 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
12 Hb_010931_120 0.0892557913 - - myosin heavy chain-related family protein [Populus trichocarpa]
13 Hb_000059_210 0.0903801091 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001811_150 0.0916959976 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
15 Hb_004108_140 0.0931072565 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
16 Hb_082609_020 0.0957953636 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002900_190 0.0963787358 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
18 Hb_003994_240 0.0965088683 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
19 Hb_026099_010 0.0971245123 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
20 Hb_004970_110 0.0974876767 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_360 Hb_000483_360 Hb_003728_030 Hb_003728_030 Hb_000483_360--Hb_003728_030 Hb_005539_030 Hb_005539_030 Hb_000483_360--Hb_005539_030 Hb_001936_020 Hb_001936_020 Hb_000483_360--Hb_001936_020 Hb_000556_020 Hb_000556_020 Hb_000483_360--Hb_000556_020 Hb_005215_030 Hb_005215_030 Hb_000483_360--Hb_005215_030 Hb_000300_280 Hb_000300_280 Hb_000483_360--Hb_000300_280 Hb_002030_030 Hb_002030_030 Hb_003728_030--Hb_002030_030 Hb_003728_030--Hb_000556_020 Hb_003994_240 Hb_003994_240 Hb_003728_030--Hb_003994_240 Hb_003728_030--Hb_000300_280 Hb_001811_150 Hb_001811_150 Hb_003728_030--Hb_001811_150 Hb_000169_010 Hb_000169_010 Hb_005539_030--Hb_000169_010 Hb_004970_110 Hb_004970_110 Hb_005539_030--Hb_004970_110 Hb_004048_070 Hb_004048_070 Hb_005539_030--Hb_004048_070 Hb_000638_080 Hb_000638_080 Hb_005539_030--Hb_000638_080 Hb_007254_040 Hb_007254_040 Hb_005539_030--Hb_007254_040 Hb_001936_020--Hb_003994_240 Hb_004577_020 Hb_004577_020 Hb_001936_020--Hb_004577_020 Hb_004108_140 Hb_004108_140 Hb_001936_020--Hb_004108_140 Hb_011671_430 Hb_011671_430 Hb_001936_020--Hb_011671_430 Hb_000059_210 Hb_000059_210 Hb_001936_020--Hb_000059_210 Hb_000556_020--Hb_001811_150 Hb_016657_010 Hb_016657_010 Hb_000556_020--Hb_016657_010 Hb_000879_140 Hb_000879_140 Hb_000556_020--Hb_000879_140 Hb_000522_090 Hb_000522_090 Hb_000556_020--Hb_000522_090 Hb_011689_040 Hb_011689_040 Hb_005215_030--Hb_011689_040 Hb_000395_080 Hb_000395_080 Hb_005215_030--Hb_000395_080 Hb_005215_030--Hb_005539_030 Hb_005215_030--Hb_000556_020 Hb_005215_030--Hb_003728_030 Hb_004310_060 Hb_004310_060 Hb_000300_280--Hb_004310_060 Hb_000300_280--Hb_000879_140 Hb_000370_030 Hb_000370_030 Hb_000300_280--Hb_000370_030 Hb_000184_130 Hb_000184_130 Hb_000300_280--Hb_000184_130 Hb_000373_270 Hb_000373_270 Hb_000300_280--Hb_000373_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.8003 28.1822 9.92565 15.4571 48.59 47.2603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.8367 25.9517 32.4624 34.5492 10.6802

CAGE analysis