Hb_005215_030

Information

Type -
Description -
Location Contig5215: 108146-110143
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06180g
description POPTRDRAFT_558391; FAD-dependent oxidoreductase family protein
nr
ID XP_002306237.2
description FAD-dependent oxidoreductase family protein [Populus trichocarpa]
swissprot
ID Q10058
description Putative oxidoreductase C1F5.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.03c PE=3 SV=1
trembl
ID B9H462
description FAD-dependent oxidoreductase family protein OS=Populus trichocarpa GN=POPTR_0005s06180g PE=4 SV=2
Gene Ontology
ID GO:0016491
description oxidoreductase tda3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46807: 108305-110056
cDNA
(Sanger)
(ID:Location)		 031_L04.ab1: 108309-109059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005215_030 0.0 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
2 Hb_000483_360 0.0747453245 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
3 Hb_011689_040 0.0854543997 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
4 Hb_000395_080 0.0979978554 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
5 Hb_005539_030 0.0982464154 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
6 Hb_000556_020 0.1017637241 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
7 Hb_003728_030 0.1053712636 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
8 Hb_002137_020 0.1053766238 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000162_170 0.1068300966 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
10 Hb_004970_110 0.1100815668 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
11 Hb_000802_080 0.1102033205 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
12 Hb_007254_040 0.1108385107 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
13 Hb_004310_030 0.1125571177 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
14 Hb_000260_220 0.1130771297 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
15 Hb_001655_070 0.1131140795 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
16 Hb_000300_640 0.1134107614 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
17 Hb_001811_150 0.1135203295 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
18 Hb_000003_480 0.1141277814 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
19 Hb_004221_010 0.1157159914 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
20 Hb_000696_340 0.1159021953 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]

Gene co-expression network

sample Hb_005215_030 Hb_005215_030 Hb_000483_360 Hb_000483_360 Hb_005215_030--Hb_000483_360 Hb_011689_040 Hb_011689_040 Hb_005215_030--Hb_011689_040 Hb_000395_080 Hb_000395_080 Hb_005215_030--Hb_000395_080 Hb_005539_030 Hb_005539_030 Hb_005215_030--Hb_005539_030 Hb_000556_020 Hb_000556_020 Hb_005215_030--Hb_000556_020 Hb_003728_030 Hb_003728_030 Hb_005215_030--Hb_003728_030 Hb_000483_360--Hb_003728_030 Hb_000483_360--Hb_005539_030 Hb_001936_020 Hb_001936_020 Hb_000483_360--Hb_001936_020 Hb_000483_360--Hb_000556_020 Hb_000300_280 Hb_000300_280 Hb_000483_360--Hb_000300_280 Hb_000522_080 Hb_000522_080 Hb_011689_040--Hb_000522_080 Hb_000162_170 Hb_000162_170 Hb_011689_040--Hb_000162_170 Hb_000696_340 Hb_000696_340 Hb_011689_040--Hb_000696_340 Hb_011689_040--Hb_000395_080 Hb_004242_080 Hb_004242_080 Hb_011689_040--Hb_004242_080 Hb_011828_020 Hb_011828_020 Hb_000395_080--Hb_011828_020 Hb_000877_060 Hb_000877_060 Hb_000395_080--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_000395_080--Hb_001477_130 Hb_000395_080--Hb_000696_340 Hb_002137_020 Hb_002137_020 Hb_000395_080--Hb_002137_020 Hb_000169_010 Hb_000169_010 Hb_005539_030--Hb_000169_010 Hb_004970_110 Hb_004970_110 Hb_005539_030--Hb_004970_110 Hb_004048_070 Hb_004048_070 Hb_005539_030--Hb_004048_070 Hb_000638_080 Hb_000638_080 Hb_005539_030--Hb_000638_080 Hb_007254_040 Hb_007254_040 Hb_005539_030--Hb_007254_040 Hb_000556_020--Hb_003728_030 Hb_001811_150 Hb_001811_150 Hb_000556_020--Hb_001811_150 Hb_016657_010 Hb_016657_010 Hb_000556_020--Hb_016657_010 Hb_000879_140 Hb_000879_140 Hb_000556_020--Hb_000879_140 Hb_000522_090 Hb_000522_090 Hb_000556_020--Hb_000522_090 Hb_002030_030 Hb_002030_030 Hb_003728_030--Hb_002030_030 Hb_003994_240 Hb_003994_240 Hb_003728_030--Hb_003994_240 Hb_003728_030--Hb_000300_280 Hb_003728_030--Hb_001811_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0353 27.6647 4.32498 17.731 47.916 45.3031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.0867 29.5257 40.2315 34.8788 11.7543

CAGE analysis