Hb_004048_070

Information

Type -
Description -
Location Contig4048: 47004-58660
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11010g
description hypothetical protein
nr
ID XP_012080802.1
description PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
swissprot
ID B3DNN5
description Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1
trembl
ID A0A067K367
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16222 PE=4 SV=1
Gene Ontology
ID GO:0000724
description anaphase-promoting complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40149: 49588-54711 , PASA_asmbl_40150: 52239-54932 , PASA_asmbl_40151: 54973-57740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_070 0.0 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
2 Hb_015746_010 0.0657190976 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
3 Hb_032717_080 0.0675333777 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
4 Hb_004970_110 0.0681987254 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
5 Hb_007254_040 0.0700924504 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
6 Hb_001135_050 0.0725168687 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
7 Hb_005539_030 0.0725505968 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
8 Hb_000638_080 0.0744915575 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
9 Hb_007317_180 0.0803859923 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
10 Hb_000169_010 0.0810294437 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
11 Hb_007441_120 0.0851836421 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
12 Hb_001604_010 0.085971838 - - 14-3-3 protein, putative [Ricinus communis]
13 Hb_001221_410 0.0864527451 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
14 Hb_006400_030 0.0869387013 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
15 Hb_000291_220 0.0869598332 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
16 Hb_000720_120 0.0872444107 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
17 Hb_026527_030 0.0882588043 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
18 Hb_001329_220 0.088868126 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001199_020 0.089924032 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
20 Hb_002043_190 0.0908137405 - - rwd domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004048_070 Hb_004048_070 Hb_015746_010 Hb_015746_010 Hb_004048_070--Hb_015746_010 Hb_032717_080 Hb_032717_080 Hb_004048_070--Hb_032717_080 Hb_004970_110 Hb_004970_110 Hb_004048_070--Hb_004970_110 Hb_007254_040 Hb_007254_040 Hb_004048_070--Hb_007254_040 Hb_001135_050 Hb_001135_050 Hb_004048_070--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004048_070--Hb_005539_030 Hb_002043_190 Hb_002043_190 Hb_015746_010--Hb_002043_190 Hb_000327_120 Hb_000327_120 Hb_015746_010--Hb_000327_120 Hb_000853_170 Hb_000853_170 Hb_015746_010--Hb_000853_170 Hb_001571_040 Hb_001571_040 Hb_015746_010--Hb_001571_040 Hb_000061_370 Hb_000061_370 Hb_015746_010--Hb_000061_370 Hb_000103_090 Hb_000103_090 Hb_032717_080--Hb_000103_090 Hb_011310_190 Hb_011310_190 Hb_032717_080--Hb_011310_190 Hb_032717_080--Hb_007254_040 Hb_000613_140 Hb_000613_140 Hb_032717_080--Hb_000613_140 Hb_002105_090 Hb_002105_090 Hb_032717_080--Hb_002105_090 Hb_007317_180 Hb_007317_180 Hb_004970_110--Hb_007317_180 Hb_004970_110--Hb_005539_030 Hb_004970_110--Hb_007254_040 Hb_027472_150 Hb_027472_150 Hb_004970_110--Hb_027472_150 Hb_000169_010 Hb_000169_010 Hb_004970_110--Hb_000169_010 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007254_040--Hb_007317_180 Hb_007254_040--Hb_000169_010 Hb_007254_040--Hb_011310_190 Hb_007254_040--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001135_050--Hb_001246_090 Hb_003392_040 Hb_003392_040 Hb_001135_050--Hb_003392_040 Hb_001135_050--Hb_000169_010 Hb_000638_080 Hb_000638_080 Hb_001135_050--Hb_000638_080 Hb_005539_030--Hb_000169_010 Hb_000483_360 Hb_000483_360 Hb_005539_030--Hb_000483_360 Hb_005539_030--Hb_000638_080 Hb_005539_030--Hb_007254_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.17924 1.42029 1.88315 2.01591 4.60265 4.28739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.0586 4.39228 3.64635 3.79888 1.38006

CAGE analysis