Hb_008554_020

Information

Type -
Description -
Location Contig8554: 17130-18337
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60535: 17097-18343 , PASA_asmbl_60536: 17281-17642
cDNA
(Sanger)
(ID:Location)		 014_B04.ab1: 17097-18341

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008554_020 0.0 - - -
2 Hb_007254_040 0.0611388044 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
3 Hb_007317_180 0.0821991415 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
4 Hb_004310_030 0.0826505552 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
5 Hb_011310_190 0.0869572885 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
6 Hb_003052_100 0.0917180426 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_117134_010 0.0970877332 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
8 Hb_002681_020 0.0974322185 - - aldose 1-epimerase, putative [Ricinus communis]
9 Hb_001135_050 0.101638899 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_032717_080 0.1016698864 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
11 Hb_148209_120 0.1023735025 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
12 Hb_001195_690 0.1032386371 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
13 Hb_046157_020 0.1074171249 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
14 Hb_005398_030 0.107426019 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
15 Hb_000061_320 0.1081381199 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
16 Hb_009954_040 0.1082638585 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
17 Hb_002235_400 0.1088071045 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
18 Hb_000174_070 0.1091625534 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
19 Hb_004970_110 0.1093220848 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
20 Hb_004657_020 0.1103660374 - - rer1 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008554_020 Hb_008554_020 Hb_007254_040 Hb_007254_040 Hb_008554_020--Hb_007254_040 Hb_007317_180 Hb_007317_180 Hb_008554_020--Hb_007317_180 Hb_004310_030 Hb_004310_030 Hb_008554_020--Hb_004310_030 Hb_011310_190 Hb_011310_190 Hb_008554_020--Hb_011310_190 Hb_003052_100 Hb_003052_100 Hb_008554_020--Hb_003052_100 Hb_117134_010 Hb_117134_010 Hb_008554_020--Hb_117134_010 Hb_007254_040--Hb_007317_180 Hb_000169_010 Hb_000169_010 Hb_007254_040--Hb_000169_010 Hb_007254_040--Hb_011310_190 Hb_004970_110 Hb_004970_110 Hb_007254_040--Hb_004970_110 Hb_001135_050 Hb_001135_050 Hb_007254_040--Hb_001135_050 Hb_007317_180--Hb_004970_110 Hb_007317_180--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_004310_030--Hb_007254_040 Hb_007894_140 Hb_007894_140 Hb_004310_030--Hb_007894_140 Hb_000638_080 Hb_000638_080 Hb_004310_030--Hb_000638_080 Hb_004310_030--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004310_030--Hb_005539_030 Hb_032717_080 Hb_032717_080 Hb_011310_190--Hb_032717_080 Hb_005398_030 Hb_005398_030 Hb_011310_190--Hb_005398_030 Hb_001221_410 Hb_001221_410 Hb_011310_190--Hb_001221_410 Hb_000103_090 Hb_000103_090 Hb_011310_190--Hb_000103_090 Hb_158092_070 Hb_158092_070 Hb_003052_100--Hb_158092_070 Hb_001195_690 Hb_001195_690 Hb_003052_100--Hb_001195_690 Hb_002078_450 Hb_002078_450 Hb_003052_100--Hb_002078_450 Hb_004657_020 Hb_004657_020 Hb_003052_100--Hb_004657_020 Hb_071736_020 Hb_071736_020 Hb_003052_100--Hb_071736_020 Hb_001671_080 Hb_001671_080 Hb_003052_100--Hb_001671_080 Hb_117134_010--Hb_005398_030 Hb_000496_060 Hb_000496_060 Hb_117134_010--Hb_000496_060 Hb_000061_320 Hb_000061_320 Hb_117134_010--Hb_000061_320 Hb_001833_110 Hb_001833_110 Hb_117134_010--Hb_001833_110 Hb_005432_030 Hb_005432_030 Hb_117134_010--Hb_005432_030 Hb_071130_030 Hb_071130_030 Hb_117134_010--Hb_071130_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.3778 26.7245 18.8612 39.8614 58.2703 105.903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
185.682 72.0538 79.7215 54.5787 23.7149

CAGE analysis