Hb_001221_410

Information

Type -
Description -
Location Contig1221: 272803-274674
Sequence    

Annotation

kegg
ID rcu:RCOM_1505640
description Protein yrdA, putative
nr
ID XP_012090673.1
description PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
swissprot
ID Q9FMV1
description Gamma carbonic anhydrase-like 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL1 PE=1 SV=1
trembl
ID A0A067JFI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26433 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06751: 272876-274530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_410 0.0 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
2 Hb_007254_040 0.0735768387 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
3 Hb_032717_080 0.0739312962 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
4 Hb_002105_090 0.0778729265 - - Rab4 [Hevea brasiliensis]
5 Hb_000169_010 0.0781706134 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
6 Hb_001135_050 0.0787731379 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
7 Hb_001246_090 0.0802921874 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
8 Hb_011310_190 0.0806621791 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
9 Hb_000638_080 0.0824683083 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
10 Hb_004048_070 0.0864527451 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
11 Hb_000720_120 0.0866697959 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
12 Hb_000272_100 0.0886423217 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
13 Hb_003994_180 0.0895422923 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
14 Hb_000154_080 0.0899572875 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
15 Hb_001329_220 0.0910831594 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009711_030 0.0915776071 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
17 Hb_070986_010 0.0932772056 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
18 Hb_159558_030 0.0937466701 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
19 Hb_004204_120 0.0942560814 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
20 Hb_003392_040 0.0944371142 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]

Gene co-expression network

sample Hb_001221_410 Hb_001221_410 Hb_007254_040 Hb_007254_040 Hb_001221_410--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_001221_410--Hb_032717_080 Hb_002105_090 Hb_002105_090 Hb_001221_410--Hb_002105_090 Hb_000169_010 Hb_000169_010 Hb_001221_410--Hb_000169_010 Hb_001135_050 Hb_001135_050 Hb_001221_410--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001221_410--Hb_001246_090 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007317_180 Hb_007317_180 Hb_007254_040--Hb_007317_180 Hb_007254_040--Hb_000169_010 Hb_011310_190 Hb_011310_190 Hb_007254_040--Hb_011310_190 Hb_004970_110 Hb_004970_110 Hb_007254_040--Hb_004970_110 Hb_007254_040--Hb_001135_050 Hb_000103_090 Hb_000103_090 Hb_032717_080--Hb_000103_090 Hb_032717_080--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_032717_080--Hb_004048_070 Hb_032717_080--Hb_007254_040 Hb_000613_140 Hb_000613_140 Hb_032717_080--Hb_000613_140 Hb_032717_080--Hb_002105_090 Hb_000494_020 Hb_000494_020 Hb_002105_090--Hb_000494_020 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_000169_010--Hb_001135_050 Hb_001135_050--Hb_001246_090 Hb_001135_050--Hb_003392_040 Hb_000638_080 Hb_000638_080 Hb_001135_050--Hb_000638_080 Hb_001135_050--Hb_004048_070 Hb_001246_090--Hb_000494_020 Hb_022250_040 Hb_022250_040 Hb_001246_090--Hb_022250_040 Hb_001246_090--Hb_003392_040 Hb_001246_090--Hb_002105_090 Hb_001246_090--Hb_004324_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.9212 27.8577 21.7341 40.0141 92.9706 77.1364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.067 93.9145 56.8254 42.4727 18.0052

CAGE analysis