Hb_007254_040

Information

Type -
Description -
Location Contig7254: 27642-29359
Sequence    

Annotation

kegg
ID rcu:RCOM_0137000
description mitochondrial carrier protein, putative
nr
ID XP_012066054.1
description PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FHX2
description Protein MITOFERRINLIKE 1, chloroplastic OS=Arabidopsis thaliana GN=MFL1 PE=2 SV=1
trembl
ID A0A067L6Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25209 PE=3 SV=1
Gene Ontology
ID GO:0005739
description protein mitoferrinlike chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 037_B07.ab1: 28094-28871

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007254_040 0.0 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
2 Hb_008554_020 0.0611388044 - - -
3 Hb_007317_180 0.0616339304 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
4 Hb_000169_010 0.0620262959 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
5 Hb_011310_190 0.0631102962 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
6 Hb_004970_110 0.064877986 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
7 Hb_001135_050 0.0676294507 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
8 Hb_032717_080 0.0683178061 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
9 Hb_004048_070 0.0700924504 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
10 Hb_001221_410 0.0735768387 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
11 Hb_005539_030 0.0749588753 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_004310_030 0.0759571846 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
13 Hb_001329_220 0.0789163576 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000720_120 0.0814775147 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
15 Hb_000638_080 0.0834890901 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
16 Hb_009954_040 0.0862350903 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
17 Hb_000061_320 0.0881353456 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
18 Hb_003392_040 0.0883578604 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
19 Hb_000371_080 0.0905012485 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
20 Hb_003020_230 0.0906402243 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]

Gene co-expression network

sample Hb_007254_040 Hb_007254_040 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007317_180 Hb_007317_180 Hb_007254_040--Hb_007317_180 Hb_000169_010 Hb_000169_010 Hb_007254_040--Hb_000169_010 Hb_011310_190 Hb_011310_190 Hb_007254_040--Hb_011310_190 Hb_004970_110 Hb_004970_110 Hb_007254_040--Hb_004970_110 Hb_001135_050 Hb_001135_050 Hb_007254_040--Hb_001135_050 Hb_008554_020--Hb_007317_180 Hb_004310_030 Hb_004310_030 Hb_008554_020--Hb_004310_030 Hb_008554_020--Hb_011310_190 Hb_003052_100 Hb_003052_100 Hb_008554_020--Hb_003052_100 Hb_117134_010 Hb_117134_010 Hb_008554_020--Hb_117134_010 Hb_007317_180--Hb_004970_110 Hb_007317_180--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_000169_010--Hb_001135_050 Hb_032717_080 Hb_032717_080 Hb_011310_190--Hb_032717_080 Hb_005398_030 Hb_005398_030 Hb_011310_190--Hb_005398_030 Hb_001221_410 Hb_001221_410 Hb_011310_190--Hb_001221_410 Hb_000103_090 Hb_000103_090 Hb_011310_190--Hb_000103_090 Hb_004970_110--Hb_005539_030 Hb_004970_110--Hb_004048_070 Hb_027472_150 Hb_027472_150 Hb_004970_110--Hb_027472_150 Hb_004970_110--Hb_000169_010 Hb_001246_090 Hb_001246_090 Hb_001135_050--Hb_001246_090 Hb_001135_050--Hb_003392_040 Hb_000638_080 Hb_000638_080 Hb_001135_050--Hb_000638_080 Hb_001135_050--Hb_004048_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5373 9.85727 8.44738 12.0949 26.569 36.5208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.4905 28.2073 23.497 20.3362 8.31883

CAGE analysis