Hb_002027_070

Information

Type -
Description -
Location Contig2027: 33151-36494
Sequence    

Annotation

kegg
ID rcu:RCOM_0647760
description Auxin-binding protein T85 precursor, putative (EC:1.3.1.74)
nr
ID XP_002524798.1
description Auxin-binding protein T85 precursor, putative [Ricinus communis]
swissprot
ID P33490
description Auxin-binding protein T85 OS=Nicotiana tabacum GN=T85 PE=3 SV=1
trembl
ID B9SFM9
description Auxin-binding protein T85, putative OS=Ricinus communis GN=RCOM_0647760 PE=4 SV=1
Gene Ontology
ID GO:0004872
description auxin-binding protein t85

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20671: 33292-36500 , PASA_asmbl_20672: 34405-34849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_070 0.0 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
2 Hb_007317_180 0.0817436663 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
3 Hb_004970_110 0.0877610162 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
4 Hb_027472_150 0.093721216 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
5 Hb_006114_030 0.0970812355 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
6 Hb_003673_060 0.0999599288 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
7 Hb_000500_090 0.1038284691 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
8 Hb_000260_170 0.1044974221 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
9 Hb_000268_020 0.1061446232 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005016_050 0.1068781989 - - -
11 Hb_005539_030 0.1083365099 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_009775_050 0.1087109133 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
13 Hb_012490_030 0.1102532787 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
14 Hb_033834_060 0.1122710791 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
15 Hb_002374_050 0.1127851122 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
16 Hb_002272_180 0.1135202272 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
17 Hb_003813_130 0.1135333784 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
18 Hb_000058_100 0.1137567172 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
19 Hb_004689_050 0.1147250591 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000627_230 0.1156171148 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002027_070 Hb_002027_070 Hb_007317_180 Hb_007317_180 Hb_002027_070--Hb_007317_180 Hb_004970_110 Hb_004970_110 Hb_002027_070--Hb_004970_110 Hb_027472_150 Hb_027472_150 Hb_002027_070--Hb_027472_150 Hb_006114_030 Hb_006114_030 Hb_002027_070--Hb_006114_030 Hb_003673_060 Hb_003673_060 Hb_002027_070--Hb_003673_060 Hb_000500_090 Hb_000500_090 Hb_002027_070--Hb_000500_090 Hb_007317_180--Hb_004970_110 Hb_007254_040 Hb_007254_040 Hb_007317_180--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_007317_180--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_007317_180--Hb_004048_070 Hb_008554_020 Hb_008554_020 Hb_007317_180--Hb_008554_020 Hb_005539_030 Hb_005539_030 Hb_004970_110--Hb_005539_030 Hb_004970_110--Hb_007254_040 Hb_004970_110--Hb_004048_070 Hb_004970_110--Hb_027472_150 Hb_000169_010 Hb_000169_010 Hb_004970_110--Hb_000169_010 Hb_000058_100 Hb_000058_100 Hb_027472_150--Hb_000058_100 Hb_002728_070 Hb_002728_070 Hb_027472_150--Hb_002728_070 Hb_001579_220 Hb_001579_220 Hb_027472_150--Hb_001579_220 Hb_002473_130 Hb_002473_130 Hb_027472_150--Hb_002473_130 Hb_000086_380 Hb_000086_380 Hb_027472_150--Hb_000086_380 Hb_002374_050 Hb_002374_050 Hb_006114_030--Hb_002374_050 Hb_004689_050 Hb_004689_050 Hb_006114_030--Hb_004689_050 Hb_033834_060 Hb_033834_060 Hb_006114_030--Hb_033834_060 Hb_006114_030--Hb_003673_060 Hb_000046_440 Hb_000046_440 Hb_006114_030--Hb_000046_440 Hb_002784_060 Hb_002784_060 Hb_006114_030--Hb_002784_060 Hb_003673_060--Hb_000046_440 Hb_005839_060 Hb_005839_060 Hb_003673_060--Hb_005839_060 Hb_012490_030 Hb_012490_030 Hb_003673_060--Hb_012490_030 Hb_000627_030 Hb_000627_030 Hb_003673_060--Hb_000627_030 Hb_011794_060 Hb_011794_060 Hb_003673_060--Hb_011794_060 Hb_001329_220 Hb_001329_220 Hb_000500_090--Hb_001329_220 Hb_002333_080 Hb_002333_080 Hb_000500_090--Hb_002333_080 Hb_000500_090--Hb_007317_180 Hb_000500_090--Hb_007254_040 Hb_000162_170 Hb_000162_170 Hb_000500_090--Hb_000162_170 Hb_000500_090--Hb_004970_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4914 11.9151 13.2607 27.5031 46.8563 61.2227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.7203 25.7154 23.4481 46.9671 15.9625

CAGE analysis