Hb_002784_060

Information

Type transcription factor
Description TF Family: bZIP
Location Contig2784: 66791-74713
Sequence    

Annotation

kegg
ID rcu:RCOM_1451970
description Transcription factor HBP-1b(c1), putative
nr
ID XP_012068684.1
description PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
swissprot
ID Q41558
description Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2
trembl
ID A0A067KWK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24546 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tga2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29085: 66870-74745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_060 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
2 Hb_000567_050 0.0726952302 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
3 Hb_002027_270 0.076130212 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
4 Hb_006114_030 0.0788896041 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
5 Hb_012490_030 0.0828046069 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
6 Hb_000031_220 0.085205631 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
7 Hb_000212_240 0.0856248959 - - short-chain dehydrogenase, putative [Ricinus communis]
8 Hb_004108_140 0.0870315648 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
9 Hb_004689_050 0.0884465541 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000429_120 0.0885901956 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
11 Hb_004881_020 0.0889770554 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
12 Hb_002374_050 0.0912373655 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
13 Hb_000046_440 0.0926604903 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
14 Hb_007741_020 0.0938187346 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
15 Hb_016657_010 0.0939260464 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
16 Hb_002044_060 0.0939480358 - - elongation factor ts, putative [Ricinus communis]
17 Hb_000600_070 0.0960846883 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
18 Hb_007317_190 0.0965824493 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
19 Hb_000260_220 0.0967154266 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_187739_020 0.0977514747 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_002784_060 Hb_002784_060 Hb_000567_050 Hb_000567_050 Hb_002784_060--Hb_000567_050 Hb_002027_270 Hb_002027_270 Hb_002784_060--Hb_002027_270 Hb_006114_030 Hb_006114_030 Hb_002784_060--Hb_006114_030 Hb_012490_030 Hb_012490_030 Hb_002784_060--Hb_012490_030 Hb_000031_220 Hb_000031_220 Hb_002784_060--Hb_000031_220 Hb_000212_240 Hb_000212_240 Hb_002784_060--Hb_000212_240 Hb_003428_070 Hb_003428_070 Hb_000567_050--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000567_050--Hb_000023_190 Hb_000743_040 Hb_000743_040 Hb_000567_050--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000567_050--Hb_000600_070 Hb_002044_060 Hb_002044_060 Hb_000567_050--Hb_002044_060 Hb_010381_060 Hb_010381_060 Hb_000567_050--Hb_010381_060 Hb_025012_010 Hb_025012_010 Hb_002027_270--Hb_025012_010 Hb_004619_050 Hb_004619_050 Hb_002027_270--Hb_004619_050 Hb_002027_270--Hb_000567_050 Hb_002027_270--Hb_000031_220 Hb_002027_270--Hb_000600_070 Hb_000429_120 Hb_000429_120 Hb_002027_270--Hb_000429_120 Hb_002374_050 Hb_002374_050 Hb_006114_030--Hb_002374_050 Hb_004689_050 Hb_004689_050 Hb_006114_030--Hb_004689_050 Hb_033834_060 Hb_033834_060 Hb_006114_030--Hb_033834_060 Hb_003673_060 Hb_003673_060 Hb_006114_030--Hb_003673_060 Hb_000046_440 Hb_000046_440 Hb_006114_030--Hb_000046_440 Hb_002272_180 Hb_002272_180 Hb_012490_030--Hb_002272_180 Hb_012490_030--Hb_000429_120 Hb_020719_030 Hb_020719_030 Hb_012490_030--Hb_020719_030 Hb_001866_110 Hb_001866_110 Hb_012490_030--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_012490_030--Hb_000889_020 Hb_002982_040 Hb_002982_040 Hb_000031_220--Hb_002982_040 Hb_002054_040 Hb_002054_040 Hb_000031_220--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_000031_220--Hb_000260_220 Hb_000003_480 Hb_000003_480 Hb_000031_220--Hb_000003_480 Hb_004881_020 Hb_004881_020 Hb_000212_240--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_000212_240--Hb_006252_040 Hb_002716_130 Hb_002716_130 Hb_000212_240--Hb_002716_130 Hb_000025_110 Hb_000025_110 Hb_000212_240--Hb_000025_110 Hb_004117_130 Hb_004117_130 Hb_000212_240--Hb_004117_130 Hb_000606_090 Hb_000606_090 Hb_000212_240--Hb_000606_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4702 24.3125 10.6123 20.3714 36.7557 59.3156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.493 17.9584 13.8443 27.281 19.6016

CAGE analysis