Hb_002272_180

Information

Type -
Description -
Location Contig2272: 114216-119422
Sequence    

Annotation

kegg
ID rcu:RCOM_1430500
description hypothetical protein
nr
ID KDP23547.1
description hypothetical protein JCGZ_23380 [Jatropha curcas]
swissprot
ID Q96G04
description Protein-lysine N-methyltransferase EEF2KMT OS=Homo sapiens GN=EEF2KMT PE=1 SV=2
trembl
ID A0A067JI38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23380 PE=4 SV=1
Gene Ontology
ID GO:0003824
description branched-chain-amino-acid aminotransferase-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23685: 114308-114815 , PASA_asmbl_23686: 115437-115596 , PASA_asmbl_23687: 115715-118500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_180 0.0 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
2 Hb_020719_030 0.0499848925 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
3 Hb_000364_060 0.0646196472 - - JHL03K20.4 [Jatropha curcas]
4 Hb_002067_040 0.070637179 - - dihydrodipicolinate reductase, putative [Ricinus communis]
5 Hb_012490_030 0.0711842862 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
6 Hb_004450_010 0.0712545112 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
7 Hb_033834_060 0.0762513689 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
8 Hb_012799_130 0.0797667582 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
9 Hb_000956_030 0.0799997742 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
10 Hb_004198_010 0.0814755156 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
11 Hb_001488_410 0.0832566156 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
12 Hb_010691_060 0.0858585326 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
13 Hb_000260_170 0.0869162218 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
14 Hb_002671_100 0.0869920093 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
15 Hb_001341_120 0.0882254461 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
16 Hb_000029_130 0.0900094782 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
17 Hb_002044_060 0.0912260369 - - elongation factor ts, putative [Ricinus communis]
18 Hb_009775_050 0.0913251634 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
19 Hb_103012_010 0.0914783453 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
20 Hb_040262_010 0.0918470498 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002272_180 Hb_002272_180 Hb_020719_030 Hb_020719_030 Hb_002272_180--Hb_020719_030 Hb_000364_060 Hb_000364_060 Hb_002272_180--Hb_000364_060 Hb_002067_040 Hb_002067_040 Hb_002272_180--Hb_002067_040 Hb_012490_030 Hb_012490_030 Hb_002272_180--Hb_012490_030 Hb_004450_010 Hb_004450_010 Hb_002272_180--Hb_004450_010 Hb_033834_060 Hb_033834_060 Hb_002272_180--Hb_033834_060 Hb_020719_030--Hb_033834_060 Hb_001488_410 Hb_001488_410 Hb_020719_030--Hb_001488_410 Hb_004117_130 Hb_004117_130 Hb_020719_030--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_020719_030--Hb_000260_170 Hb_103012_010 Hb_103012_010 Hb_020719_030--Hb_103012_010 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_002174_060 Hb_002174_060 Hb_000364_060--Hb_002174_060 Hb_004198_010 Hb_004198_010 Hb_000364_060--Hb_004198_010 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_000364_060--Hb_004450_010 Hb_000322_050 Hb_000322_050 Hb_002067_040--Hb_000322_050 Hb_003025_020 Hb_003025_020 Hb_002067_040--Hb_003025_020 Hb_000076_270 Hb_000076_270 Hb_002067_040--Hb_000076_270 Hb_000429_200 Hb_000429_200 Hb_002067_040--Hb_000429_200 Hb_002067_040--Hb_012490_030 Hb_000429_120 Hb_000429_120 Hb_012490_030--Hb_000429_120 Hb_012490_030--Hb_020719_030 Hb_001866_110 Hb_001866_110 Hb_012490_030--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_012490_030--Hb_000889_020 Hb_002784_060 Hb_002784_060 Hb_012490_030--Hb_002784_060 Hb_002044_060 Hb_002044_060 Hb_004450_010--Hb_002044_060 Hb_000956_030 Hb_000956_030 Hb_004450_010--Hb_000956_030 Hb_000768_110 Hb_000768_110 Hb_004450_010--Hb_000768_110 Hb_004370_030 Hb_004370_030 Hb_004450_010--Hb_004370_030 Hb_001221_040 Hb_001221_040 Hb_004450_010--Hb_001221_040 Hb_004689_050 Hb_004689_050 Hb_033834_060--Hb_004689_050 Hb_004429_100 Hb_004429_100 Hb_033834_060--Hb_004429_100 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_001172_010 Hb_001172_010 Hb_033834_060--Hb_001172_010 Hb_033834_060--Hb_001488_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72989 1.37746 2.0548 2.11294 5.14042 6.88677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.84046 2.8139 1.95401 3.38552 1.59589

CAGE analysis