Hb_000076_270

Information

Type -
Description -
Location Contig76: 198758-202998
Sequence    

Annotation

kegg
ID vvi:100255424
description DDRGK domain-containing protein 1
nr
ID XP_011048306.1
description PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
swissprot
ID Q8LH03
description DDRGK domain-containing protein 1 OS=Oryza sativa subsp. japonica GN=Os07g0103200 PE=2 SV=1
trembl
ID D7T0B0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0177g00150 PE=4 SV=1
Gene Ontology
ID GO:0044699
description ddrgk domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57261: 188998-200951 , PASA_asmbl_57262: 203916-205999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_270 0.0 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
2 Hb_001341_120 0.061053152 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
3 Hb_002273_130 0.0696404464 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
4 Hb_001300_070 0.0712571891 - - OTU domain-containing protein 6B, putative [Ricinus communis]
5 Hb_091384_010 0.092038884 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
6 Hb_000913_050 0.0939010682 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
7 Hb_002272_180 0.0958102049 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
8 Hb_030131_040 0.0962895458 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
9 Hb_001143_110 0.0971564842 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
10 Hb_002067_040 0.0976642587 - - dihydrodipicolinate reductase, putative [Ricinus communis]
11 Hb_000059_140 0.098254856 - - rnase h, putative [Ricinus communis]
12 Hb_000358_250 0.1002184836 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
13 Hb_040262_010 0.1003714303 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
14 Hb_001541_090 0.1012889922 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
15 Hb_004837_190 0.1017213917 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
16 Hb_000526_050 0.1022520009 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
17 Hb_000480_010 0.1030146326 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003464_020 0.1037110012 - - srpk, putative [Ricinus communis]
19 Hb_000059_150 0.1045119641 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
20 Hb_000317_250 0.1054340893 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_270 Hb_000076_270 Hb_001341_120 Hb_001341_120 Hb_000076_270--Hb_001341_120 Hb_002273_130 Hb_002273_130 Hb_000076_270--Hb_002273_130 Hb_001300_070 Hb_001300_070 Hb_000076_270--Hb_001300_070 Hb_091384_010 Hb_091384_010 Hb_000076_270--Hb_091384_010 Hb_000913_050 Hb_000913_050 Hb_000076_270--Hb_000913_050 Hb_002272_180 Hb_002272_180 Hb_000076_270--Hb_002272_180 Hb_030131_040 Hb_030131_040 Hb_001341_120--Hb_030131_040 Hb_001341_120--Hb_002273_130 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_001341_120--Hb_000913_050 Hb_002273_130--Hb_030131_040 Hb_001541_090 Hb_001541_090 Hb_002273_130--Hb_001541_090 Hb_000059_150 Hb_000059_150 Hb_002273_130--Hb_000059_150 Hb_002273_130--Hb_001300_070 Hb_001300_070--Hb_001341_120 Hb_001300_070--Hb_000059_150 Hb_008595_010 Hb_008595_010 Hb_001300_070--Hb_008595_010 Hb_005098_010 Hb_005098_010 Hb_001300_070--Hb_005098_010 Hb_000640_220 Hb_000640_220 Hb_091384_010--Hb_000640_220 Hb_091384_010--Hb_002273_130 Hb_005895_040 Hb_005895_040 Hb_091384_010--Hb_005895_040 Hb_000261_520 Hb_000261_520 Hb_091384_010--Hb_000261_520 Hb_091384_010--Hb_001341_120 Hb_000358_250 Hb_000358_250 Hb_091384_010--Hb_000358_250 Hb_001828_160 Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_020719_030 Hb_020719_030 Hb_002272_180--Hb_020719_030 Hb_000364_060 Hb_000364_060 Hb_002272_180--Hb_000364_060 Hb_002067_040 Hb_002067_040 Hb_002272_180--Hb_002067_040 Hb_012490_030 Hb_012490_030 Hb_002272_180--Hb_012490_030 Hb_004450_010 Hb_004450_010 Hb_002272_180--Hb_004450_010 Hb_033834_060 Hb_033834_060 Hb_002272_180--Hb_033834_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9414 5.85529 8.67343 9.73082 25.7912 19.3857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.416 8.73609 4.26062 12.6109 6.34034

CAGE analysis