Hb_001828_160

Information

Type -
Description -
Location Contig1828: 218071-225436
Sequence    

Annotation

kegg
ID -
description -
nr
ID EMT26543.1
description hypothetical protein F775_31105 [Aegilops tauschii]
swissprot
ID -
description -
trembl
ID M8BXL2
description Uncharacterized protein OS=Aegilops tauschii GN=F775_31105 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17830: 218132-219182 , PASA_asmbl_17831: 218093-219372 , PASA_asmbl_17832: 220633-220733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_160 0.0 - - hypothetical protein F775_31105 [Aegilops tauschii]
2 Hb_000207_310 0.0516844446 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
3 Hb_000913_050 0.0579296548 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
4 Hb_021422_010 0.0654152024 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
5 Hb_006620_020 0.0721414786 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
6 Hb_000116_180 0.0722657297 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
7 Hb_001545_200 0.0724464399 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
8 Hb_003605_130 0.0727814873 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
9 Hb_002367_130 0.0733264532 - - UNC-50 family protein isoform 1 [Theobroma cacao]
10 Hb_003018_130 0.0746407228 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
11 Hb_006960_050 0.076633245 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
12 Hb_002093_030 0.0767691261 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
13 Hb_000794_050 0.0767829535 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
14 Hb_000334_270 0.0769183113 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
15 Hb_000214_040 0.0778315371 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000367_130 0.0778995143 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000059_140 0.0821365208 - - rnase h, putative [Ricinus communis]
18 Hb_002175_030 0.0832173294 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
19 Hb_001433_070 0.0838391607 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
20 Hb_002823_030 0.0843491384 - - -

Gene co-expression network

sample Hb_001828_160 Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_001828_160--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_001828_160--Hb_000913_050 Hb_021422_010 Hb_021422_010 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_000116_180 Hb_000116_180 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000913_050--Hb_000029_130 Hb_000913_050--Hb_000116_180 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_006623_020 Hb_006623_020 Hb_021422_010--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_021422_010--Hb_003018_060 Hb_000032_490 Hb_000032_490 Hb_021422_010--Hb_000032_490 Hb_000808_250 Hb_000808_250 Hb_021422_010--Hb_000808_250 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_004055_150 Hb_004055_150 Hb_006620_020--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_003849_250 Hb_003849_250 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_140049_030 Hb_140049_030 Hb_001545_200--Hb_140049_030 Hb_001545_200--Hb_021422_010 Hb_002157_260 Hb_002157_260 Hb_001545_200--Hb_002157_260 Hb_005332_020 Hb_005332_020 Hb_001545_200--Hb_005332_020 Hb_001307_080 Hb_001307_080 Hb_001545_200--Hb_001307_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.72972 3.17409 3.29146 2.74037 7.31928 5.56466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99164 3.97441 2.16929 3.2563 3.31997

CAGE analysis