Hb_000174_110

Information

Type -
Description -
Location Contig174: 148038-151298
Sequence    

Annotation

kegg
ID rcu:RCOM_1077220
description hypothetical protein
nr
ID XP_012085819.1
description PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JSQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18075 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16556: 148163-150041 , PASA_asmbl_16557: 148163-150990
cDNA
(Sanger)
(ID:Location)		 039_D18.ab1: 148163-149589

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_110 0.0 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
2 Hb_010068_040 0.0565297082 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
3 Hb_006620_020 0.0581131722 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
4 Hb_005618_160 0.0617327508 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
5 Hb_054865_100 0.0652092945 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
6 Hb_002175_030 0.0706792034 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
7 Hb_001486_340 0.0711289801 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
8 Hb_001329_130 0.0713750112 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002918_030 0.0724637607 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
10 Hb_003029_030 0.0726291496 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
11 Hb_003030_070 0.0750925701 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
12 Hb_011970_030 0.0755974844 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
13 Hb_001586_040 0.0773512701 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
14 Hb_000853_230 0.0774874379 - - syntaxin, putative [Ricinus communis]
15 Hb_008406_110 0.0779992678 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
16 Hb_000334_270 0.0787853437 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
17 Hb_003292_040 0.0793999241 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
18 Hb_003849_060 0.0806957967 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
19 Hb_001433_070 0.0826925859 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
20 Hb_006960_050 0.0837093643 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000174_110 Hb_000174_110 Hb_010068_040 Hb_010068_040 Hb_000174_110--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_000174_110--Hb_006620_020 Hb_005618_160 Hb_005618_160 Hb_000174_110--Hb_005618_160 Hb_054865_100 Hb_054865_100 Hb_000174_110--Hb_054865_100 Hb_002175_030 Hb_002175_030 Hb_000174_110--Hb_002175_030 Hb_001486_340 Hb_001486_340 Hb_000174_110--Hb_001486_340 Hb_033153_070 Hb_033153_070 Hb_010068_040--Hb_033153_070 Hb_000334_270 Hb_000334_270 Hb_010068_040--Hb_000334_270 Hb_010068_040--Hb_002175_030 Hb_003029_030 Hb_003029_030 Hb_010068_040--Hb_003029_030 Hb_001433_070 Hb_001433_070 Hb_010068_040--Hb_001433_070 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_004055_150 Hb_004055_150 Hb_006620_020--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_006620_020--Hb_001926_030 Hb_006620_020--Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_011970_030 Hb_011970_030 Hb_005618_160--Hb_011970_030 Hb_000462_140 Hb_000462_140 Hb_005618_160--Hb_000462_140 Hb_003010_030 Hb_003010_030 Hb_005618_160--Hb_003010_030 Hb_002495_040 Hb_002495_040 Hb_005618_160--Hb_002495_040 Hb_066182_010 Hb_066182_010 Hb_054865_100--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_054865_100--Hb_005276_210 Hb_000327_120 Hb_000327_120 Hb_054865_100--Hb_000327_120 Hb_000645_050 Hb_000645_050 Hb_054865_100--Hb_000645_050 Hb_002175_030--Hb_001433_070 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_002175_030--Hb_000853_230 Hb_001089_110 Hb_001089_110 Hb_002175_030--Hb_001089_110 Hb_002175_030--Hb_006620_020 Hb_000538_100 Hb_000538_100 Hb_001486_340--Hb_000538_100 Hb_000179_030 Hb_000179_030 Hb_001486_340--Hb_000179_030 Hb_006355_010 Hb_006355_010 Hb_001486_340--Hb_006355_010 Hb_000308_030 Hb_000308_030 Hb_001486_340--Hb_000308_030 Hb_001486_340--Hb_006620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6897 5.96659 8.21325 6.0673 13.8449 10.8021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84252 10.4243 4.86501 6.51783 4.33228

CAGE analysis