Hb_001433_070

Information

Type -
Description -
Location Contig1433: 76043-78489
Sequence    

Annotation

kegg
ID tcc:TCM_026684
description Uncharacterized protein isoform 1
nr
ID XP_012088973.1
description PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23283 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11397: 76002-78501 , PASA_asmbl_11398: 76296-78412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_070 0.0 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
2 Hb_079526_030 0.0515744364 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
3 Hb_001089_110 0.0525852567 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002175_030 0.0559059494 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
5 Hb_002110_230 0.0600773335 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
6 Hb_003878_110 0.0616154362 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
7 Hb_183612_040 0.0648713221 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
8 Hb_008103_070 0.0667482798 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
9 Hb_000331_110 0.0675616003 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
10 Hb_005588_090 0.067805993 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
11 Hb_002684_040 0.0680080651 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
12 Hb_010068_040 0.0684767988 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
13 Hb_000351_120 0.068748661 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
14 Hb_004785_100 0.0712681797 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001143_180 0.0724780199 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
16 Hb_006355_010 0.0729469121 - - PREDICTED: protein NLRC3 [Jatropha curcas]
17 Hb_001821_160 0.0729656641 - - serine/arginine rich splicing factor, putative [Ricinus communis]
18 Hb_012753_170 0.0734349196 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
19 Hb_032202_120 0.0741248648 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
20 Hb_006620_020 0.0743565694 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]

Gene co-expression network

sample Hb_001433_070 Hb_001433_070 Hb_079526_030 Hb_079526_030 Hb_001433_070--Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_001433_070--Hb_001089_110 Hb_002175_030 Hb_002175_030 Hb_001433_070--Hb_002175_030 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040 Hb_079526_030--Hb_001089_110 Hb_000331_110 Hb_000331_110 Hb_079526_030--Hb_000331_110 Hb_079526_030--Hb_003878_110 Hb_001821_160 Hb_001821_160 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_001089_110--Hb_000331_110 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_002175_030--Hb_000853_230 Hb_002175_030--Hb_001089_110 Hb_010068_040 Hb_010068_040 Hb_002175_030--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_002175_030--Hb_006620_020 Hb_005618_050 Hb_005618_050 Hb_002110_230--Hb_005618_050 Hb_000351_120 Hb_000351_120 Hb_002110_230--Hb_000351_120 Hb_002918_030 Hb_002918_030 Hb_002110_230--Hb_002918_030 Hb_063716_100 Hb_063716_100 Hb_002110_230--Hb_063716_100 Hb_001040_100 Hb_001040_100 Hb_002110_230--Hb_001040_100 Hb_002684_040 Hb_002684_040 Hb_003878_110--Hb_002684_040 Hb_003878_110--Hb_000331_110 Hb_002374_260 Hb_002374_260 Hb_003878_110--Hb_002374_260 Hb_001143_180 Hb_001143_180 Hb_003878_110--Hb_001143_180 Hb_000005_220 Hb_000005_220 Hb_183612_040--Hb_000005_220 Hb_183612_040--Hb_002684_040 Hb_183612_040--Hb_003878_110 Hb_183612_040--Hb_079526_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9565 24.9489 36.6162 21.9718 43.3717 43.077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3358 30.2942 15.6461 32.7303 22.546

CAGE analysis