Hb_063716_100

Information

Type -
Description -
Location Contig63716: 82036-90836
Sequence    

Annotation

kegg
ID pda:103719228
description DEAD-box ATP-dependent RNA helicase 15
nr
ID XP_012073201.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LFN6
description DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=1 SV=2
trembl
ID A0A067KLR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06153 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 56-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51986: 82086-90844 , PASA_asmbl_51987: 88438-88892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063716_100 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
2 Hb_000351_120 0.0624404653 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
3 Hb_000417_130 0.0639687245 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
4 Hb_001357_250 0.0643740989 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
5 Hb_000345_380 0.0647887695 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
6 Hb_168978_030 0.0661843584 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
7 Hb_000617_180 0.0679273706 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
8 Hb_028872_090 0.0684965381 - - PREDICTED: urease [Jatropha curcas]
9 Hb_000005_220 0.068623909 - - DNA ligase 1, partial [Glycine soja]
10 Hb_000020_150 0.0694399668 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
11 Hb_000575_040 0.0694920378 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
12 Hb_002784_020 0.0695253649 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
13 Hb_001357_350 0.0704809435 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002303_070 0.0706932854 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
15 Hb_003025_110 0.0715721474 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
16 Hb_004410_030 0.0728144892 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_183612_040 0.0736371232 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
18 Hb_000640_170 0.0745996296 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
19 Hb_001089_110 0.0751596321 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000035_470 0.0755691492 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_063716_100 Hb_063716_100 Hb_000351_120 Hb_000351_120 Hb_063716_100--Hb_000351_120 Hb_000417_130 Hb_000417_130 Hb_063716_100--Hb_000417_130 Hb_001357_250 Hb_001357_250 Hb_063716_100--Hb_001357_250 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_168978_030 Hb_168978_030 Hb_063716_100--Hb_168978_030 Hb_000617_180 Hb_000617_180 Hb_063716_100--Hb_000617_180 Hb_001433_070 Hb_001433_070 Hb_000351_120--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_000351_120--Hb_005337_090 Hb_000020_150 Hb_000020_150 Hb_000351_120--Hb_000020_150 Hb_002684_040 Hb_002684_040 Hb_000351_120--Hb_002684_040 Hb_002110_230 Hb_002110_230 Hb_000351_120--Hb_002110_230 Hb_123915_040 Hb_123915_040 Hb_000417_130--Hb_123915_040 Hb_000417_130--Hb_001357_250 Hb_001357_350 Hb_001357_350 Hb_000417_130--Hb_001357_350 Hb_001268_240 Hb_001268_240 Hb_000417_130--Hb_001268_240 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_033642_090 Hb_033642_090 Hb_001357_250--Hb_033642_090 Hb_004410_030 Hb_004410_030 Hb_001357_250--Hb_004410_030 Hb_001357_250--Hb_123915_040 Hb_000907_110 Hb_000907_110 Hb_001357_250--Hb_000907_110 Hb_105328_020 Hb_105328_020 Hb_000345_380--Hb_105328_020 Hb_011037_030 Hb_011037_030 Hb_000345_380--Hb_011037_030 Hb_000030_190 Hb_000030_190 Hb_000345_380--Hb_000030_190 Hb_000789_310 Hb_000789_310 Hb_000345_380--Hb_000789_310 Hb_008406_200 Hb_008406_200 Hb_000345_380--Hb_008406_200 Hb_001409_020 Hb_001409_020 Hb_000345_380--Hb_001409_020 Hb_000640_170 Hb_000640_170 Hb_168978_030--Hb_000640_170 Hb_168978_030--Hb_000035_470 Hb_168978_030--Hb_000617_180 Hb_168978_030--Hb_105328_020 Hb_002044_150 Hb_002044_150 Hb_168978_030--Hb_002044_150 Hb_000156_010 Hb_000156_010 Hb_168978_030--Hb_000156_010 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000347_070 Hb_000347_070 Hb_000617_180--Hb_000347_070 Hb_002375_010 Hb_002375_010 Hb_000617_180--Hb_002375_010 Hb_004619_030 Hb_004619_030 Hb_000617_180--Hb_004619_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6759 10.8361 17.3243 11.9953 14.5399 20.4028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9587 14.3351 11.555 19.7567 11.3167

CAGE analysis