Hb_000907_110

Information

Type -
Description -
Location Contig907: 126700-139481
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05240g
description dihydroxyacetone kinase family protein
nr
ID XP_006374230.1
description dihydroxyacetone kinase family protein [Populus trichocarpa]
swissprot
ID O04059
description Putative 3,4-dihydroxy-2-butanone kinase OS=Solanum lycopersicum GN=DHBK PE=2 SV=1
trembl
ID B9N399
description Dihydroxyacetone kinase family protein OS=Populus trichocarpa GN=POPTR_0015s05240g PE=4 SV=1
Gene Ontology
ID GO:0004371
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62056: 126755-134959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_110 0.0 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
2 Hb_000181_400 0.0522088578 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
3 Hb_033642_090 0.0623978891 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001357_250 0.0636429537 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
5 Hb_028285_010 0.0658099289 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
6 Hb_004324_130 0.0720267653 - - polypyrimidine tract binding protein, putative [Ricinus communis]
7 Hb_000130_410 0.0751801133 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
8 Hb_023732_030 0.0752198878 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
9 Hb_003294_070 0.075315786 - - hypothetical protein RCOM_1714550 [Ricinus communis]
10 Hb_000193_190 0.0785963225 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
11 Hb_000696_230 0.0793267306 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
12 Hb_000329_470 0.0794292391 - - ccr4-not transcription complex, putative [Ricinus communis]
13 Hb_003494_200 0.0796751407 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
14 Hb_000225_040 0.0800171018 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
15 Hb_000205_100 0.0800998391 - - PREDICTED: exportin-4 [Jatropha curcas]
16 Hb_001579_220 0.0807604506 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
17 Hb_001635_090 0.0812192716 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
18 Hb_001178_070 0.0822538945 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
19 Hb_000853_350 0.0831244906 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
20 Hb_000003_320 0.0832931229 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]

Gene co-expression network

sample Hb_000907_110 Hb_000907_110 Hb_000181_400 Hb_000181_400 Hb_000907_110--Hb_000181_400 Hb_033642_090 Hb_033642_090 Hb_000907_110--Hb_033642_090 Hb_001357_250 Hb_001357_250 Hb_000907_110--Hb_001357_250 Hb_028285_010 Hb_028285_010 Hb_000907_110--Hb_028285_010 Hb_004324_130 Hb_004324_130 Hb_000907_110--Hb_004324_130 Hb_000130_410 Hb_000130_410 Hb_000907_110--Hb_000130_410 Hb_000181_400--Hb_004324_130 Hb_003294_070 Hb_003294_070 Hb_000181_400--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_000181_400--Hb_007416_120 Hb_000111_290 Hb_000111_290 Hb_000181_400--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_000181_400--Hb_001876_050 Hb_033642_090--Hb_001357_250 Hb_002784_020 Hb_002784_020 Hb_033642_090--Hb_002784_020 Hb_006831_140 Hb_006831_140 Hb_033642_090--Hb_006831_140 Hb_123915_040 Hb_123915_040 Hb_033642_090--Hb_123915_040 Hb_000696_230 Hb_000696_230 Hb_033642_090--Hb_000696_230 Hb_004410_030 Hb_004410_030 Hb_001357_250--Hb_004410_030 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_001357_250--Hb_123915_040 Hb_063716_100 Hb_063716_100 Hb_001357_250--Hb_063716_100 Hb_000062_070 Hb_000062_070 Hb_028285_010--Hb_000062_070 Hb_005048_130 Hb_005048_130 Hb_028285_010--Hb_005048_130 Hb_003761_010 Hb_003761_010 Hb_028285_010--Hb_003761_010 Hb_001408_040 Hb_001408_040 Hb_028285_010--Hb_001408_040 Hb_014497_050 Hb_014497_050 Hb_028285_010--Hb_014497_050 Hb_004324_130--Hb_000111_290 Hb_004324_130--Hb_001876_050 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_004324_130--Hb_007416_120 Hb_004324_130--Hb_006831_140 Hb_000318_250 Hb_000318_250 Hb_000130_410--Hb_000318_250 Hb_002026_210 Hb_002026_210 Hb_000130_410--Hb_002026_210 Hb_001396_200 Hb_001396_200 Hb_000130_410--Hb_001396_200 Hb_000708_030 Hb_000708_030 Hb_000130_410--Hb_000708_030 Hb_000130_410--Hb_004324_130 Hb_001546_080 Hb_001546_080 Hb_000130_410--Hb_001546_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.49058 9.35 6.26191 8.41997 11.5768 9.34583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6313 10.7834 8.53704 13.0579 6.15265

CAGE analysis