Hb_000696_230

Information

Type -
Description -
Location Contig696: 138815-147104
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11280g
description hypothetical protein
nr
ID XP_006383071.1
description hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
swissprot
ID Q7X659
description Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=1 SV=1
trembl
ID U5GBE7
description Vacuolar protein sorting-associated protein 35 OS=Populus trichocarpa GN=POPTR_0005s11280g PE=3 SV=1
Gene Ontology
ID GO:0030904
description vacuolar protein sorting-associated protein 35a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54595: 139040-146794 , PASA_asmbl_54596: 145925-146235 , PASA_asmbl_54597: 141798-141921 , PASA_asmbl_54598: 139040-141792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_230 0.0 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
2 Hb_000975_040 0.0582570752 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
3 Hb_000484_030 0.0602396639 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
4 Hb_000441_120 0.0621129405 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001408_040 0.0631759312 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
6 Hb_005867_070 0.0634699932 - - DNA binding protein, putative [Ricinus communis]
7 Hb_003464_090 0.0637108028 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
8 Hb_000679_310 0.0642412438 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
9 Hb_002784_020 0.0645617045 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
10 Hb_008453_140 0.066225527 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
11 Hb_001408_140 0.0663339794 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
12 Hb_000165_040 0.0666811839 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
13 Hb_002375_010 0.0669007003 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
14 Hb_033642_090 0.0670008606 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002652_030 0.0674373946 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
16 Hb_017862_020 0.0681726354 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
17 Hb_000614_210 0.0687100033 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
18 Hb_001104_160 0.0688263537 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
19 Hb_014361_070 0.0692235104 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
20 Hb_167498_010 0.0693060287 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000696_230 Hb_000696_230 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000484_030 Hb_000484_030 Hb_000696_230--Hb_000484_030 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090 Hb_000958_140 Hb_000958_140 Hb_000975_040--Hb_000958_140 Hb_014361_070 Hb_014361_070 Hb_000975_040--Hb_014361_070 Hb_001369_130 Hb_001369_130 Hb_000975_040--Hb_001369_130 Hb_012395_140 Hb_012395_140 Hb_000975_040--Hb_012395_140 Hb_002835_230 Hb_002835_230 Hb_000975_040--Hb_002835_230 Hb_008453_140 Hb_008453_140 Hb_000484_030--Hb_008453_140 Hb_001409_020 Hb_001409_020 Hb_000484_030--Hb_001409_020 Hb_000484_030--Hb_001408_040 Hb_007416_340 Hb_007416_340 Hb_000484_030--Hb_007416_340 Hb_003125_120 Hb_003125_120 Hb_000484_030--Hb_003125_120 Hb_006420_040 Hb_006420_040 Hb_000441_120--Hb_006420_040 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_003206_130 Hb_003206_130 Hb_000441_120--Hb_003206_130 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5627 14.6875 11.4335 11.7634 15.2578 13.5771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1435 15.0932 10.6135 15.3031 11.1029

CAGE analysis