Hb_010381_090

Information

Type -
Description -
Location Contig10381: 77121-81834
Sequence    

Annotation

kegg
ID tcc:TCM_029013
description DNA double-strand break repair rad50 ATPase isoform 1
nr
ID XP_012069000.1
description PREDICTED: protein FLX-like 3 [Jatropha curcas]
swissprot
ID Q9C717
description Protein FLX-like 3 OS=Arabidopsis thaliana GN=FLXL3 PE=1 SV=1
trembl
ID A0A067L9M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24788 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01427: 77176-87665 , PASA_asmbl_01428: 77178-81730 , PASA_asmbl_01429: 78055-78445 , PASA_asmbl_01430: 77330-77456
cDNA
(Sanger)
(ID:Location)		 052_P18.ab1: 77178-78884

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_090 0.0 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
2 Hb_007416_300 0.0418656013 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
3 Hb_002872_030 0.0441075059 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
4 Hb_008453_140 0.044337244 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
5 Hb_120410_010 0.0608068492 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
6 Hb_001142_030 0.0611952198 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
7 Hb_003549_150 0.0613547412 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
8 Hb_000220_010 0.0614040161 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
9 Hb_011995_010 0.0628311998 - - dc50, putative [Ricinus communis]
10 Hb_003964_070 0.0630462392 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
11 Hb_001408_040 0.0631502215 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
12 Hb_143395_010 0.0654047643 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
13 Hb_000484_030 0.0655167779 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
14 Hb_027428_010 0.0668266489 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
15 Hb_002078_110 0.0668464055 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
16 Hb_001051_080 0.0673068112 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
17 Hb_006455_120 0.0675569317 - - n6-DNA-methyltransferase, putative [Ricinus communis]
18 Hb_001357_350 0.0676842856 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000580_180 0.0689472994 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000345_380 0.069343279 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]

Gene co-expression network

sample Hb_010381_090 Hb_010381_090 Hb_007416_300 Hb_007416_300 Hb_010381_090--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_010381_090--Hb_002872_030 Hb_008453_140 Hb_008453_140 Hb_010381_090--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_010381_090--Hb_120410_010 Hb_001142_030 Hb_001142_030 Hb_010381_090--Hb_001142_030 Hb_003549_150 Hb_003549_150 Hb_010381_090--Hb_003549_150 Hb_001051_080 Hb_001051_080 Hb_007416_300--Hb_001051_080 Hb_007416_300--Hb_002872_030 Hb_007416_300--Hb_003549_150 Hb_033642_030 Hb_033642_030 Hb_007416_300--Hb_033642_030 Hb_007416_300--Hb_008453_140 Hb_027428_010 Hb_027428_010 Hb_002872_030--Hb_027428_010 Hb_002872_030--Hb_008453_140 Hb_006588_070 Hb_006588_070 Hb_002872_030--Hb_006588_070 Hb_073973_130 Hb_073973_130 Hb_002872_030--Hb_073973_130 Hb_008453_140--Hb_120410_010 Hb_003125_120 Hb_003125_120 Hb_008453_140--Hb_003125_120 Hb_008453_140--Hb_001142_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_120410_010--Hb_001142_030 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_001142_030--Hb_003125_120 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1224 26.9881 32.8499 30.6535 33.6584 35.2305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0586 31.8315 26.8466 23.6627 18.0738

CAGE analysis