Hb_002530_030

Information

Type -
Description -
Location Contig2530: 29218-45509
Sequence    

Annotation

kegg
ID tcc:TCM_039510
description RNA polymerase II ctd phosphatase, putative isoform 1
nr
ID XP_012078975.1
description PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
swissprot
ID Q00IB6
description RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
trembl
ID A0A067KJ07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13822 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase ii c-terminal domain phosphatase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002530_030 0.0 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
2 Hb_000317_240 0.0438034511 - - PREDICTED: protein DYAD [Jatropha curcas]
3 Hb_120410_010 0.0546227961 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
4 Hb_001305_010 0.0610358428 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
5 Hb_000016_250 0.0644029263 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
6 Hb_004310_150 0.0665711023 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
7 Hb_011995_010 0.0671333078 - - dc50, putative [Ricinus communis]
8 Hb_000757_060 0.0673498558 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
9 Hb_004116_060 0.0680756844 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
10 Hb_001163_050 0.0683917159 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
11 Hb_008453_140 0.0688962776 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
12 Hb_000563_320 0.0690100682 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
13 Hb_002518_280 0.071454055 - - phosphate transporter [Manihot esculenta]
14 Hb_000959_210 0.0720432899 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
15 Hb_000465_460 0.0721999423 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
16 Hb_000768_090 0.072286706 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
17 Hb_009421_020 0.0723178161 - - PREDICTED: caltractin-like [Jatropha curcas]
18 Hb_003417_020 0.0727080885 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
19 Hb_001012_010 0.0727221057 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
20 Hb_000010_400 0.0728716972 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]

Gene co-expression network

sample Hb_002530_030 Hb_002530_030 Hb_000317_240 Hb_000317_240 Hb_002530_030--Hb_000317_240 Hb_120410_010 Hb_120410_010 Hb_002530_030--Hb_120410_010 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010 Hb_000757_060 Hb_000757_060 Hb_000317_240--Hb_000757_060 Hb_000768_090 Hb_000768_090 Hb_000317_240--Hb_000768_090 Hb_000465_460 Hb_000465_460 Hb_000317_240--Hb_000465_460 Hb_058999_020 Hb_058999_020 Hb_000317_240--Hb_058999_020 Hb_000504_140 Hb_000504_140 Hb_000317_240--Hb_000504_140 Hb_008453_140 Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_001142_030 Hb_001142_030 Hb_120410_010--Hb_001142_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090 Hb_007951_060 Hb_007951_060 Hb_001305_010--Hb_007951_060 Hb_006185_050 Hb_006185_050 Hb_001305_010--Hb_006185_050 Hb_003417_020 Hb_003417_020 Hb_001305_010--Hb_003417_020 Hb_000327_120 Hb_000327_120 Hb_001305_010--Hb_000327_120 Hb_000853_430 Hb_000853_430 Hb_001305_010--Hb_000853_430 Hb_000563_320 Hb_000563_320 Hb_000016_250--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_000016_250--Hb_005779_060 Hb_001157_040 Hb_001157_040 Hb_000016_250--Hb_001157_040 Hb_000096_070 Hb_000096_070 Hb_000016_250--Hb_000096_070 Hb_001242_060 Hb_001242_060 Hb_000016_250--Hb_001242_060 Hb_031527_040 Hb_031527_040 Hb_000016_250--Hb_031527_040 Hb_002518_280 Hb_002518_280 Hb_004310_150--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_004310_150--Hb_000152_380 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280 Hb_000010_400 Hb_000010_400 Hb_011995_010--Hb_000010_400 Hb_001248_060 Hb_001248_060 Hb_011995_010--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_011995_010--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020 Hb_011995_010--Hb_000563_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7279 12.295 16.6694 9.54652 19.823 19.7506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3066 23.6857 17.4181 12.8416 9.58571

CAGE analysis