Hb_002477_280

Information

Type -
Description -
Location Contig2477: 200514-201080
Sequence    

Annotation

kegg
ID rcu:RCOM_0654790
description Mitochondrial import inner membrane translocase subunit tim23, putative
nr
ID XP_012068935.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
swissprot
ID Q9LNQ1
description Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1
trembl
ID A0A067L9J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24738 PE=4 SV=1
Gene Ontology
ID GO:0005744
description mitochondrial import inner membrane translocase subunit tim23-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_280 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
2 Hb_005276_210 0.05929042 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
3 Hb_000085_160 0.0629634172 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
4 Hb_004310_150 0.0638053852 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
5 Hb_003952_090 0.07010798 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
6 Hb_003525_010 0.0701316954 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
7 Hb_000300_060 0.0703461814 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
8 Hb_003010_030 0.0720149538 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
9 Hb_000827_070 0.0742802623 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
10 Hb_001790_020 0.0748408496 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
11 Hb_000225_040 0.0753472009 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
12 Hb_001369_220 0.0759827913 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
13 Hb_000152_380 0.0780125812 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
14 Hb_000038_170 0.0781063658 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
15 Hb_002248_080 0.0784022296 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
16 Hb_001097_050 0.0803666081 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_096563_010 0.0806385064 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
18 Hb_002876_110 0.0807954034 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000099_080 0.0811315506 - - kinesin light chain, putative [Ricinus communis]
20 Hb_000093_160 0.0815034689 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_280 Hb_002477_280 Hb_005276_210 Hb_005276_210 Hb_002477_280--Hb_005276_210 Hb_000085_160 Hb_000085_160 Hb_002477_280--Hb_000085_160 Hb_004310_150 Hb_004310_150 Hb_002477_280--Hb_004310_150 Hb_003952_090 Hb_003952_090 Hb_002477_280--Hb_003952_090 Hb_003525_010 Hb_003525_010 Hb_002477_280--Hb_003525_010 Hb_000300_060 Hb_000300_060 Hb_002477_280--Hb_000300_060 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005276_210--Hb_054865_100 Hb_005276_210--Hb_000300_060 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_007317_110 Hb_007317_110 Hb_000085_160--Hb_007317_110 Hb_000085_160--Hb_003525_010 Hb_000011_200 Hb_000011_200 Hb_000085_160--Hb_000011_200 Hb_000630_050 Hb_000630_050 Hb_000085_160--Hb_000630_050 Hb_003665_060 Hb_003665_060 Hb_000085_160--Hb_003665_060 Hb_000010_330 Hb_000010_330 Hb_000085_160--Hb_000010_330 Hb_002518_280 Hb_002518_280 Hb_004310_150--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_004310_150--Hb_000152_380 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_001481_090 Hb_001481_090 Hb_003952_090--Hb_001481_090 Hb_001369_220 Hb_001369_220 Hb_003952_090--Hb_001369_220 Hb_001766_110 Hb_001766_110 Hb_003952_090--Hb_001766_110 Hb_002759_150 Hb_002759_150 Hb_003952_090--Hb_002759_150 Hb_018838_030 Hb_018838_030 Hb_003952_090--Hb_018838_030 Hb_000092_170 Hb_000092_170 Hb_003525_010--Hb_000092_170 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_000300_060--Hb_066182_010 Hb_003097_150 Hb_003097_150 Hb_000300_060--Hb_003097_150 Hb_001571_040 Hb_001571_040 Hb_000300_060--Hb_001571_040 Hb_002081_130 Hb_002081_130 Hb_000300_060--Hb_002081_130 Hb_003010_030 Hb_003010_030 Hb_000300_060--Hb_003010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.21219 6.32458 3.16743 4.90891 10.0488 8.97545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37837 10.2838 6.1426 6.43772 4.63823

CAGE analysis