Hb_001369_220

Information

Type -
Description -
Location Contig1369: 235695-253948
Sequence    

Annotation

kegg
ID rcu:RCOM_1500700
description structural maintenance of chromosomes 6 smc6, putative
nr
ID XP_012090457.1
description PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
swissprot
ID Q9FII7
description Structural maintenance of chromosomes protein 6B OS=Arabidopsis thaliana GN=SMC6B PE=2 SV=1
trembl
ID A0A067JF22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26268 PE=4 SV=1
Gene Ontology
ID GO:0030915
description structural maintenance of chromosomes protein 6b-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10153: 235846-236761 , PASA_asmbl_10154: 237465-238317 , PASA_asmbl_10155: 238347-244290 , PASA_asmbl_10156: 244906-245164 , PASA_asmbl_10157: 247160-247936 , PASA_asmbl_10158: 248481-251034 , PASA_asmbl_10161: 253464-253788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_220 0.0 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
2 Hb_003952_090 0.0734725248 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
3 Hb_002477_280 0.0759827913 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
4 Hb_001481_090 0.0794357917 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
5 Hb_000041_270 0.0805731768 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
6 Hb_002205_040 0.0807084104 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000959_210 0.0832381879 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
8 Hb_002652_030 0.0834566194 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
9 Hb_004310_150 0.088110372 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
10 Hb_004032_430 0.0883027956 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
11 Hb_007054_060 0.0896064203 - - -
12 Hb_011609_100 0.0901647354 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
13 Hb_000093_160 0.0935733782 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
14 Hb_000663_040 0.0951348588 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
15 Hb_002660_080 0.0954412359 - - 60S ribosomal protein L12A [Hevea brasiliensis]
16 Hb_003935_020 0.0968392953 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000210_180 0.0971344023 - - PREDICTED: protein YLS9-like [Jatropha curcas]
18 Hb_156973_010 0.0972872446 - - conserved hypothetical protein [Ricinus communis]
19 Hb_036790_100 0.0976565516 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
20 Hb_003010_030 0.0982970004 - - ribonuclease p/mrp subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_220 Hb_001369_220 Hb_003952_090 Hb_003952_090 Hb_001369_220--Hb_003952_090 Hb_002477_280 Hb_002477_280 Hb_001369_220--Hb_002477_280 Hb_001481_090 Hb_001481_090 Hb_001369_220--Hb_001481_090 Hb_000041_270 Hb_000041_270 Hb_001369_220--Hb_000041_270 Hb_002205_040 Hb_002205_040 Hb_001369_220--Hb_002205_040 Hb_000959_210 Hb_000959_210 Hb_001369_220--Hb_000959_210 Hb_003952_090--Hb_002477_280 Hb_003952_090--Hb_001481_090 Hb_001766_110 Hb_001766_110 Hb_003952_090--Hb_001766_110 Hb_002759_150 Hb_002759_150 Hb_003952_090--Hb_002759_150 Hb_018838_030 Hb_018838_030 Hb_003952_090--Hb_018838_030 Hb_005276_210 Hb_005276_210 Hb_002477_280--Hb_005276_210 Hb_000085_160 Hb_000085_160 Hb_002477_280--Hb_000085_160 Hb_004310_150 Hb_004310_150 Hb_002477_280--Hb_004310_150 Hb_003525_010 Hb_003525_010 Hb_002477_280--Hb_003525_010 Hb_000300_060 Hb_000300_060 Hb_002477_280--Hb_000300_060 Hb_001481_090--Hb_001766_110 Hb_001481_090--Hb_000041_270 Hb_038172_010 Hb_038172_010 Hb_001481_090--Hb_038172_010 Hb_003126_080 Hb_003126_080 Hb_001481_090--Hb_003126_080 Hb_000656_400 Hb_000656_400 Hb_001481_090--Hb_000656_400 Hb_000210_180 Hb_000210_180 Hb_000041_270--Hb_000210_180 Hb_096563_010 Hb_096563_010 Hb_000041_270--Hb_096563_010 Hb_003126_050 Hb_003126_050 Hb_000041_270--Hb_003126_050 Hb_000757_060 Hb_000757_060 Hb_000041_270--Hb_000757_060 Hb_004491_010 Hb_004491_010 Hb_000041_270--Hb_004491_010 Hb_023386_040 Hb_023386_040 Hb_002205_040--Hb_023386_040 Hb_002890_020 Hb_002890_020 Hb_002205_040--Hb_002890_020 Hb_001014_050 Hb_001014_050 Hb_002205_040--Hb_001014_050 Hb_000926_190 Hb_000926_190 Hb_002205_040--Hb_000926_190 Hb_000207_310 Hb_000207_310 Hb_002205_040--Hb_000207_310 Hb_022693_120 Hb_022693_120 Hb_002205_040--Hb_022693_120 Hb_003935_020 Hb_003935_020 Hb_000959_210--Hb_003935_020 Hb_002652_030 Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_120410_010 Hb_120410_010 Hb_000959_210--Hb_120410_010 Hb_004032_430 Hb_004032_430 Hb_000959_210--Hb_004032_430 Hb_004093_090 Hb_004093_090 Hb_000959_210--Hb_004093_090 Hb_002530_030 Hb_002530_030 Hb_000959_210--Hb_002530_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1595 7.78239 5.11853 4.25246 10.4153 12.0386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.92697 14.9863 5.79026 8.17494 4.66023

CAGE analysis