Hb_002652_030

Information

Type -
Description -
Location Contig2652: 17251-25642
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06230g
description POPTRDRAFT_558393; hypothetical protein
nr
ID XP_012075287.1
description PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
swissprot
ID Q9M0V4
description U3 snoRNP-associated protein-like YAO OS=Arabidopsis thaliana GN=YAO PE=2 SV=1
trembl
ID A0A067KJZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09457 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27726: 17286-23587 , PASA_asmbl_27727: 24130-25111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002652_030 0.0 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
2 Hb_001089_110 0.0638318074 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000696_230 0.0674373946 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
4 Hb_000959_210 0.0686993335 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
5 Hb_164544_010 0.072058297 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
6 Hb_002175_030 0.0723100514 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
7 Hb_008453_140 0.0727465105 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
8 Hb_007576_080 0.0748899091 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
9 Hb_003935_020 0.0755761 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000334_280 0.075846945 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
11 Hb_000563_230 0.0765863036 - - phospholipase d zeta, putative [Ricinus communis]
12 Hb_004310_150 0.0771449322 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
13 Hb_004032_430 0.0805956743 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
14 Hb_008103_070 0.0811360472 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
15 Hb_003125_120 0.0811808833 - - PREDICTED: TITAN-like protein [Jatropha curcas]
16 Hb_001369_220 0.0834566194 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
17 Hb_014109_040 0.0837567371 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
18 Hb_000402_080 0.0852588977 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
19 Hb_000757_060 0.0858848943 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
20 Hb_004837_240 0.0859734856 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002652_030 Hb_002652_030 Hb_001089_110 Hb_001089_110 Hb_002652_030--Hb_001089_110 Hb_000696_230 Hb_000696_230 Hb_002652_030--Hb_000696_230 Hb_000959_210 Hb_000959_210 Hb_002652_030--Hb_000959_210 Hb_164544_010 Hb_164544_010 Hb_002652_030--Hb_164544_010 Hb_002175_030 Hb_002175_030 Hb_002652_030--Hb_002175_030 Hb_008453_140 Hb_008453_140 Hb_002652_030--Hb_008453_140 Hb_079526_030 Hb_079526_030 Hb_001089_110--Hb_079526_030 Hb_001433_070 Hb_001433_070 Hb_001089_110--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_000331_110 Hb_000331_110 Hb_001089_110--Hb_000331_110 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000484_030 Hb_000484_030 Hb_000696_230--Hb_000484_030 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090 Hb_003935_020 Hb_003935_020 Hb_000959_210--Hb_003935_020 Hb_120410_010 Hb_120410_010 Hb_000959_210--Hb_120410_010 Hb_004032_430 Hb_004032_430 Hb_000959_210--Hb_004032_430 Hb_004093_090 Hb_004093_090 Hb_000959_210--Hb_004093_090 Hb_002530_030 Hb_002530_030 Hb_000959_210--Hb_002530_030 Hb_002784_020 Hb_002784_020 Hb_164544_010--Hb_002784_020 Hb_004235_080 Hb_004235_080 Hb_164544_010--Hb_004235_080 Hb_164544_010--Hb_001089_110 Hb_000089_120 Hb_000089_120 Hb_164544_010--Hb_000089_120 Hb_017862_020 Hb_017862_020 Hb_164544_010--Hb_017862_020 Hb_002175_030--Hb_001433_070 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_002175_030--Hb_000853_230 Hb_002175_030--Hb_001089_110 Hb_010068_040 Hb_010068_040 Hb_002175_030--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_002175_030--Hb_006620_020 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_003125_120 Hb_003125_120 Hb_008453_140--Hb_003125_120 Hb_001142_030 Hb_001142_030 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.65866 5.7398 4.91126 3.66639 7.02045 6.0383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85705 7.82669 3.83673 6.277 3.52572

CAGE analysis