Hb_000220_010

Information

Type -
Description -
Location Contig220: 8254-9572
Sequence    

Annotation

kegg
ID rcu:RCOM_0512630
description hypothetical protein
nr
ID XP_012067163.1
description PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LD58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03092 PE=4 SV=1
Gene Ontology
ID GO:0010467
description integral membrane protein hemolysin- isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22630: 7325-25922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_010 0.0 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
2 Hb_008453_140 0.0541118898 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
3 Hb_007451_010 0.0544029523 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
4 Hb_014720_120 0.0587751056 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
5 Hb_010381_090 0.0614040161 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
6 Hb_120410_010 0.0616549261 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
7 Hb_002740_030 0.0625748218 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
8 Hb_001142_030 0.0628440933 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
9 Hb_002872_030 0.0633785119 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
10 Hb_001357_150 0.0634309729 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
11 Hb_007416_340 0.0636376033 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_003938_090 0.0644161712 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013738_020 0.065369583 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
14 Hb_002205_110 0.068178816 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003125_120 0.0682754585 - - PREDICTED: TITAN-like protein [Jatropha curcas]
16 Hb_156635_010 0.0722004252 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
17 Hb_001408_040 0.0724415878 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
18 Hb_000580_180 0.0758169287 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002245_030 0.0764965252 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_000116_450 0.0771340657 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000220_010 Hb_000220_010 Hb_008453_140 Hb_008453_140 Hb_000220_010--Hb_008453_140 Hb_007451_010 Hb_007451_010 Hb_000220_010--Hb_007451_010 Hb_014720_120 Hb_014720_120 Hb_000220_010--Hb_014720_120 Hb_010381_090 Hb_010381_090 Hb_000220_010--Hb_010381_090 Hb_120410_010 Hb_120410_010 Hb_000220_010--Hb_120410_010 Hb_002740_030 Hb_002740_030 Hb_000220_010--Hb_002740_030 Hb_008453_140--Hb_120410_010 Hb_008453_140--Hb_010381_090 Hb_003125_120 Hb_003125_120 Hb_008453_140--Hb_003125_120 Hb_001142_030 Hb_001142_030 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_156635_010 Hb_156635_010 Hb_007451_010--Hb_156635_010 Hb_001357_150 Hb_001357_150 Hb_007451_010--Hb_001357_150 Hb_007451_010--Hb_002740_030 Hb_007451_010--Hb_001142_030 Hb_022181_030 Hb_022181_030 Hb_007451_010--Hb_022181_030 Hb_002245_030 Hb_002245_030 Hb_014720_120--Hb_002245_030 Hb_014720_120--Hb_120410_010 Hb_000086_170 Hb_000086_170 Hb_014720_120--Hb_000086_170 Hb_014720_120--Hb_010381_090 Hb_007878_010 Hb_007878_010 Hb_014720_120--Hb_007878_010 Hb_007416_300 Hb_007416_300 Hb_010381_090--Hb_007416_300 Hb_010381_090--Hb_002872_030 Hb_010381_090--Hb_120410_010 Hb_010381_090--Hb_001142_030 Hb_003549_150 Hb_003549_150 Hb_010381_090--Hb_003549_150 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_120410_010--Hb_001142_030 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_120410_010--Hb_002740_030 Hb_002740_030--Hb_001142_030 Hb_000416_040 Hb_000416_040 Hb_002740_030--Hb_000416_040 Hb_002740_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_002740_030--Hb_001163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4485 19.0519 18.6699 20.918 19.3087 22.6602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2034 27.0514 13.6799 13.5346 11.9741

CAGE analysis