Hb_156635_010

Information

Type -
Description -
Location Contig156635: 2893-5970
Sequence    

Annotation

kegg
ID rcu:RCOM_0541040
description gaba(A) receptor-associated protein, putative
nr
ID XP_012069955.1
description PREDICTED: autophagy-related protein 8f [Jatropha curcas]
swissprot
ID Q8VYK7
description Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1
trembl
ID A0A067L6Y2
description Autophagy-related protein OS=Jatropha curcas GN=JCGZ_03385 PE=3 SV=1
Gene Ontology
ID GO:0006914
description autophagy-related protein 8f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13623: 2878-6018 , PASA_asmbl_13625: 5272-5465 , PASA_asmbl_13626: 3746-4454
cDNA
(Sanger)
(ID:Location)		 002_C08.ab1: 2928-6018

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156635_010 0.0 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
2 Hb_007451_010 0.0567205769 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
3 Hb_000220_010 0.0722004252 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
4 Hb_014720_120 0.0753323647 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
5 Hb_002740_030 0.0765080291 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
6 Hb_003389_040 0.0779955689 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
7 Hb_007441_190 0.0818026523 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
8 Hb_007878_010 0.0828629349 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
9 Hb_000667_070 0.0848203925 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
10 Hb_000270_310 0.0857171687 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
11 Hb_001278_100 0.0867526873 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
12 Hb_161574_020 0.0872227519 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
13 Hb_000086_170 0.0872643353 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
14 Hb_164010_040 0.0887467495 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_001357_150 0.0902119297 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
16 Hb_002171_060 0.0902145576 - - conserved hypothetical protein [Ricinus communis]
17 Hb_172632_120 0.0918949619 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001142_030 0.0923141868 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
19 Hb_000032_380 0.093803694 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002245_030 0.0942713898 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_156635_010 Hb_156635_010 Hb_007451_010 Hb_007451_010 Hb_156635_010--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_156635_010--Hb_000220_010 Hb_014720_120 Hb_014720_120 Hb_156635_010--Hb_014720_120 Hb_002740_030 Hb_002740_030 Hb_156635_010--Hb_002740_030 Hb_003389_040 Hb_003389_040 Hb_156635_010--Hb_003389_040 Hb_007441_190 Hb_007441_190 Hb_156635_010--Hb_007441_190 Hb_007451_010--Hb_000220_010 Hb_001357_150 Hb_001357_150 Hb_007451_010--Hb_001357_150 Hb_007451_010--Hb_002740_030 Hb_001142_030 Hb_001142_030 Hb_007451_010--Hb_001142_030 Hb_022181_030 Hb_022181_030 Hb_007451_010--Hb_022181_030 Hb_008453_140 Hb_008453_140 Hb_000220_010--Hb_008453_140 Hb_000220_010--Hb_014720_120 Hb_010381_090 Hb_010381_090 Hb_000220_010--Hb_010381_090 Hb_120410_010 Hb_120410_010 Hb_000220_010--Hb_120410_010 Hb_000220_010--Hb_002740_030 Hb_002245_030 Hb_002245_030 Hb_014720_120--Hb_002245_030 Hb_014720_120--Hb_120410_010 Hb_000086_170 Hb_000086_170 Hb_014720_120--Hb_000086_170 Hb_014720_120--Hb_010381_090 Hb_007878_010 Hb_007878_010 Hb_014720_120--Hb_007878_010 Hb_002740_030--Hb_001142_030 Hb_000416_040 Hb_000416_040 Hb_002740_030--Hb_000416_040 Hb_002740_030--Hb_120410_010 Hb_002740_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_002740_030--Hb_001163_050 Hb_008226_060 Hb_008226_060 Hb_003389_040--Hb_008226_060 Hb_007101_300 Hb_007101_300 Hb_003389_040--Hb_007101_300 Hb_000032_380 Hb_000032_380 Hb_003389_040--Hb_000032_380 Hb_000417_040 Hb_000417_040 Hb_003389_040--Hb_000417_040 Hb_000357_110 Hb_000357_110 Hb_003389_040--Hb_000357_110 Hb_002863_050 Hb_002863_050 Hb_007441_190--Hb_002863_050 Hb_000580_180 Hb_000580_180 Hb_007441_190--Hb_000580_180 Hb_172632_120 Hb_172632_120 Hb_007441_190--Hb_172632_120 Hb_011344_210 Hb_011344_210 Hb_007441_190--Hb_011344_210 Hb_000948_230 Hb_000948_230 Hb_007441_190--Hb_000948_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.7175 51.8792 63.1653 71.8253 46.1635 61.4446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.6414 105.365 44.5812 34.7032 25.8142

CAGE analysis