Hb_000357_110

Information

Type -
Description -
Location Contig357: 149195-154877
Sequence    

Annotation

kegg
ID pvu:PHAVU_008G137900g
description hypothetical protein
nr
ID XP_012084613.1
description PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36841: 152590-153308 , PASA_asmbl_36842: 153558-153827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000357_110 0.0 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
2 Hb_002205_110 0.071021691 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005306_190 0.0736395601 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
4 Hb_003389_040 0.0765025807 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
5 Hb_006816_350 0.0784946677 - - PREDICTED: syntaxin-43 [Jatropha curcas]
6 Hb_010997_080 0.0800764825 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
7 Hb_004586_140 0.0816905593 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
8 Hb_028962_020 0.0834882317 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
9 Hb_005048_130 0.0838621139 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
10 Hb_000649_110 0.0866588489 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
11 Hb_000028_370 0.0869892142 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
12 Hb_008226_060 0.0891827944 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
13 Hb_028285_010 0.0905302676 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
14 Hb_001408_040 0.0921223671 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
15 Hb_095296_010 0.0924659027 - - PREDICTED: syntaxin-32 [Jatropha curcas]
16 Hb_000441_140 0.092880874 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
17 Hb_013738_020 0.0940207844 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
18 Hb_004310_020 0.0940348356 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
19 Hb_000522_150 0.0948263075 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
20 Hb_000062_070 0.0948274375 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]

Gene co-expression network

sample Hb_000357_110 Hb_000357_110 Hb_002205_110 Hb_002205_110 Hb_000357_110--Hb_002205_110 Hb_005306_190 Hb_005306_190 Hb_000357_110--Hb_005306_190 Hb_003389_040 Hb_003389_040 Hb_000357_110--Hb_003389_040 Hb_006816_350 Hb_006816_350 Hb_000357_110--Hb_006816_350 Hb_010997_080 Hb_010997_080 Hb_000357_110--Hb_010997_080 Hb_004586_140 Hb_004586_140 Hb_000357_110--Hb_004586_140 Hb_000028_370 Hb_000028_370 Hb_002205_110--Hb_000028_370 Hb_001205_240 Hb_001205_240 Hb_002205_110--Hb_001205_240 Hb_002232_410 Hb_002232_410 Hb_002205_110--Hb_002232_410 Hb_001408_040 Hb_001408_040 Hb_002205_110--Hb_001408_040 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_095296_010 Hb_095296_010 Hb_005306_190--Hb_095296_010 Hb_005116_060 Hb_005116_060 Hb_005306_190--Hb_005116_060 Hb_007943_050 Hb_007943_050 Hb_005306_190--Hb_007943_050 Hb_000178_130 Hb_000178_130 Hb_005306_190--Hb_000178_130 Hb_000179_070 Hb_000179_070 Hb_005306_190--Hb_000179_070 Hb_008226_060 Hb_008226_060 Hb_003389_040--Hb_008226_060 Hb_007101_300 Hb_007101_300 Hb_003389_040--Hb_007101_300 Hb_000032_380 Hb_000032_380 Hb_003389_040--Hb_000032_380 Hb_000417_040 Hb_000417_040 Hb_003389_040--Hb_000417_040 Hb_156635_010 Hb_156635_010 Hb_003389_040--Hb_156635_010 Hb_000661_290 Hb_000661_290 Hb_006816_350--Hb_000661_290 Hb_006816_350--Hb_095296_010 Hb_003020_270 Hb_003020_270 Hb_006816_350--Hb_003020_270 Hb_000868_110 Hb_000868_110 Hb_006816_350--Hb_000868_110 Hb_006816_350--Hb_000179_070 Hb_010997_080--Hb_000441_140 Hb_010997_080--Hb_000028_370 Hb_000173_490 Hb_000173_490 Hb_010997_080--Hb_000173_490 Hb_010997_080--Hb_003389_040 Hb_005048_130 Hb_005048_130 Hb_010997_080--Hb_005048_130 Hb_004586_140--Hb_000179_070 Hb_012389_020 Hb_012389_020 Hb_004586_140--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_004586_140--Hb_000302_270 Hb_000061_470 Hb_000061_470 Hb_004586_140--Hb_000061_470 Hb_000308_030 Hb_000308_030 Hb_004586_140--Hb_000308_030 Hb_000521_320 Hb_000521_320 Hb_004586_140--Hb_000521_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.22925 12.6908 7.91877 12.3172 6.93666 9.62022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.98034 11.3742 7.6245 6.54917 3.01916

CAGE analysis