Hb_007943_050

Information

Type -
Description -
Location Contig7943: 62983-64589
Sequence    

Annotation

kegg
ID rcu:RCOM_1052060
description peroxiredoxin, putative (EC:1.11.1.15)
nr
ID XP_002514273.1
description peroxiredoxin, putative [Ricinus communis]
swissprot
ID Q9XEX2
description Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1
trembl
ID B9RKM9
description Peroxiredoxin, putative OS=Ricinus communis GN=RCOM_1052060 PE=4 SV=1
Gene Ontology
ID GO:0004601
description peroxiredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58459: 63102-64597
cDNA
(Sanger)
(ID:Location)		 027_L03.ab1: 63102-64597 , 039_G19.ab1: 63102-64543 , 050_N23.ab1: 63102-64597

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_050 0.0 - - peroxiredoxin, putative [Ricinus communis]
2 Hb_000045_300 0.0882005483 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
3 Hb_009545_090 0.0885635877 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
4 Hb_005306_190 0.0887213592 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
5 Hb_000210_010 0.0935268043 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
6 Hb_095296_010 0.0967507206 - - PREDICTED: syntaxin-32 [Jatropha curcas]
7 Hb_010519_040 0.1093809977 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
8 Hb_000738_020 0.1112355998 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000178_130 0.1112382729 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
10 Hb_005116_060 0.1123173282 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
11 Hb_005867_090 0.1132925309 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
12 Hb_000357_110 0.113374572 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
13 Hb_000987_060 0.1159372475 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
14 Hb_001221_220 0.1167681898 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
15 Hb_012239_020 0.1171434264 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
16 Hb_000878_070 0.1174776804 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
17 Hb_004324_300 0.1181901673 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
18 Hb_000868_110 0.1193724989 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
19 Hb_005162_090 0.1194475863 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
20 Hb_164010_040 0.1215994393 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007943_050 Hb_007943_050 Hb_000045_300 Hb_000045_300 Hb_007943_050--Hb_000045_300 Hb_009545_090 Hb_009545_090 Hb_007943_050--Hb_009545_090 Hb_005306_190 Hb_005306_190 Hb_007943_050--Hb_005306_190 Hb_000210_010 Hb_000210_010 Hb_007943_050--Hb_000210_010 Hb_095296_010 Hb_095296_010 Hb_007943_050--Hb_095296_010 Hb_010519_040 Hb_010519_040 Hb_007943_050--Hb_010519_040 Hb_000327_380 Hb_000327_380 Hb_000045_300--Hb_000327_380 Hb_000327_230 Hb_000327_230 Hb_000045_300--Hb_000327_230 Hb_000733_200 Hb_000733_200 Hb_000045_300--Hb_000733_200 Hb_003362_030 Hb_003362_030 Hb_000045_300--Hb_003362_030 Hb_012565_070 Hb_012565_070 Hb_000045_300--Hb_012565_070 Hb_005015_080 Hb_005015_080 Hb_009545_090--Hb_005015_080 Hb_002232_480 Hb_002232_480 Hb_009545_090--Hb_002232_480 Hb_002869_050 Hb_002869_050 Hb_009545_090--Hb_002869_050 Hb_003925_040 Hb_003925_040 Hb_009545_090--Hb_003925_040 Hb_002553_040 Hb_002553_040 Hb_009545_090--Hb_002553_040 Hb_000357_110 Hb_000357_110 Hb_005306_190--Hb_000357_110 Hb_005306_190--Hb_095296_010 Hb_005116_060 Hb_005116_060 Hb_005306_190--Hb_005116_060 Hb_000178_130 Hb_000178_130 Hb_005306_190--Hb_000178_130 Hb_000179_070 Hb_000179_070 Hb_005306_190--Hb_000179_070 Hb_000649_130 Hb_000649_130 Hb_000210_010--Hb_000649_130 Hb_006909_060 Hb_006909_060 Hb_000210_010--Hb_006909_060 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000342_060 Hb_000342_060 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020 Hb_000868_110 Hb_000868_110 Hb_095296_010--Hb_000868_110 Hb_002073_200 Hb_002073_200 Hb_095296_010--Hb_002073_200 Hb_095296_010--Hb_005116_060 Hb_003020_270 Hb_003020_270 Hb_095296_010--Hb_003020_270 Hb_006816_350 Hb_006816_350 Hb_095296_010--Hb_006816_350 Hb_000869_080 Hb_000869_080 Hb_095296_010--Hb_000869_080 Hb_001221_220 Hb_001221_220 Hb_010519_040--Hb_001221_220 Hb_010519_040--Hb_000210_010 Hb_010519_040--Hb_009545_090 Hb_005867_090 Hb_005867_090 Hb_010519_040--Hb_005867_090 Hb_010519_040--Hb_000342_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.3629 171.652 112.315 128.764 53.8358 53.7903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.023 154.629 90.2251 52.0531 36.716

CAGE analysis