Hb_010519_040

Information

Type -
Description -
Location Contig10519: 53947-56797
Sequence    

Annotation

kegg
ID rcu:RCOM_1001330
description hypothetical protein
nr
ID XP_012084113.1
description PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19027 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01759: 54025-55817 , PASA_asmbl_01760: 55936-56625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010519_040 0.0 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
2 Hb_007943_050 0.1093809977 - - peroxiredoxin, putative [Ricinus communis]
3 Hb_001221_220 0.1224434254 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
4 Hb_000210_010 0.1342759843 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
5 Hb_009545_090 0.1365704117 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
6 Hb_005867_090 0.1415578444 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
7 Hb_000342_060 0.1454556817 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
8 Hb_000649_130 0.1457590869 - - Polcalcin Jun o, putative [Ricinus communis]
9 Hb_005306_190 0.1463591214 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
10 Hb_139294_010 0.1468793272 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_006909_060 0.1476856311 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
12 Hb_000538_240 0.1480792016 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
13 Hb_000178_130 0.149510822 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
14 Hb_084490_010 0.150569273 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
15 Hb_003020_270 0.1512211064 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
16 Hb_095296_010 0.1515377926 - - PREDICTED: syntaxin-32 [Jatropha curcas]
17 Hb_000987_060 0.1526495407 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
18 Hb_007017_040 0.1545736408 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
19 Hb_010534_010 0.1572155199 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
20 Hb_003925_040 0.1577868495 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]

Gene co-expression network

sample Hb_010519_040 Hb_010519_040 Hb_007943_050 Hb_007943_050 Hb_010519_040--Hb_007943_050 Hb_001221_220 Hb_001221_220 Hb_010519_040--Hb_001221_220 Hb_000210_010 Hb_000210_010 Hb_010519_040--Hb_000210_010 Hb_009545_090 Hb_009545_090 Hb_010519_040--Hb_009545_090 Hb_005867_090 Hb_005867_090 Hb_010519_040--Hb_005867_090 Hb_000342_060 Hb_000342_060 Hb_010519_040--Hb_000342_060 Hb_000045_300 Hb_000045_300 Hb_007943_050--Hb_000045_300 Hb_007943_050--Hb_009545_090 Hb_005306_190 Hb_005306_190 Hb_007943_050--Hb_005306_190 Hb_007943_050--Hb_000210_010 Hb_095296_010 Hb_095296_010 Hb_007943_050--Hb_095296_010 Hb_001221_220--Hb_005867_090 Hb_000538_240 Hb_000538_240 Hb_001221_220--Hb_000538_240 Hb_001221_220--Hb_007943_050 Hb_156635_010 Hb_156635_010 Hb_001221_220--Hb_156635_010 Hb_000733_200 Hb_000733_200 Hb_001221_220--Hb_000733_200 Hb_003567_030 Hb_003567_030 Hb_001221_220--Hb_003567_030 Hb_000649_130 Hb_000649_130 Hb_000210_010--Hb_000649_130 Hb_006909_060 Hb_006909_060 Hb_000210_010--Hb_006909_060 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020 Hb_005015_080 Hb_005015_080 Hb_009545_090--Hb_005015_080 Hb_002232_480 Hb_002232_480 Hb_009545_090--Hb_002232_480 Hb_002869_050 Hb_002869_050 Hb_009545_090--Hb_002869_050 Hb_003925_040 Hb_003925_040 Hb_009545_090--Hb_003925_040 Hb_002553_040 Hb_002553_040 Hb_009545_090--Hb_002553_040 Hb_005867_090--Hb_000733_200 Hb_007317_010 Hb_007317_010 Hb_005867_090--Hb_007317_010 Hb_164010_040 Hb_164010_040 Hb_005867_090--Hb_164010_040 Hb_000086_140 Hb_000086_140 Hb_005867_090--Hb_000086_140 Hb_001124_010 Hb_001124_010 Hb_005867_090--Hb_001124_010 Hb_001437_150 Hb_001437_150 Hb_005867_090--Hb_001437_150 Hb_000342_060--Hb_000164_020 Hb_001246_110 Hb_001246_110 Hb_000342_060--Hb_001246_110 Hb_000056_210 Hb_000056_210 Hb_000342_060--Hb_000056_210 Hb_000342_060--Hb_095296_010 Hb_000868_110 Hb_000868_110 Hb_000342_060--Hb_000868_110 Hb_000856_380 Hb_000856_380 Hb_000342_060--Hb_000856_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2579 36.8184 19.7042 35.9385 15.2179 6.2963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9641 34.3937 19.8503 6.54273 7.66227

CAGE analysis