Hb_000210_010

Information

Type -
Description -
Location Contig210: 11502-12356
Sequence    

Annotation

kegg
ID rcu:RCOM_0225810
description ccr4-associated factor, putative (EC:3.1.13.4)
nr
ID XP_012074359.1
description PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
swissprot
ID Q9FMS6
description Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1
trembl
ID A0A067KMB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08787 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ccr4-associated factor 1 homolog 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_010 0.0 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
2 Hb_007943_050 0.0935268043 - - peroxiredoxin, putative [Ricinus communis]
3 Hb_000649_130 0.1063107884 - - Polcalcin Jun o, putative [Ricinus communis]
4 Hb_006909_060 0.1102410823 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
5 Hb_001856_200 0.1111336491 - - Esterase PIR7B, putative [Ricinus communis]
6 Hb_000342_060 0.1182254971 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
7 Hb_000164_020 0.123824692 - - actin binding protein, putative [Ricinus communis]
8 Hb_004324_300 0.1248039908 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
9 Hb_002701_220 0.1253447632 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
10 Hb_000987_060 0.1259882304 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
11 Hb_010519_040 0.1342759843 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
12 Hb_017987_050 0.135105518 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
13 Hb_005306_190 0.1353833312 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
14 Hb_000178_130 0.1354338253 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
15 Hb_000045_300 0.136882798 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
16 Hb_000856_380 0.1414106808 - - ubiquitin-conjugating enzyme [Medicago truncatula]
17 Hb_005074_030 0.1429048482 - - -
18 Hb_002217_020 0.1431762676 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
19 Hb_006788_140 0.1471822704 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
20 Hb_002042_130 0.1486869026 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000210_010 Hb_000210_010 Hb_007943_050 Hb_007943_050 Hb_000210_010--Hb_007943_050 Hb_000649_130 Hb_000649_130 Hb_000210_010--Hb_000649_130 Hb_006909_060 Hb_006909_060 Hb_000210_010--Hb_006909_060 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000342_060 Hb_000342_060 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020 Hb_000045_300 Hb_000045_300 Hb_007943_050--Hb_000045_300 Hb_009545_090 Hb_009545_090 Hb_007943_050--Hb_009545_090 Hb_005306_190 Hb_005306_190 Hb_007943_050--Hb_005306_190 Hb_095296_010 Hb_095296_010 Hb_007943_050--Hb_095296_010 Hb_010519_040 Hb_010519_040 Hb_007943_050--Hb_010519_040 Hb_005074_030 Hb_005074_030 Hb_000649_130--Hb_005074_030 Hb_000178_130 Hb_000178_130 Hb_000649_130--Hb_000178_130 Hb_000327_380 Hb_000327_380 Hb_000649_130--Hb_000327_380 Hb_116608_010 Hb_116608_010 Hb_000649_130--Hb_116608_010 Hb_000649_130--Hb_007943_050 Hb_000987_060 Hb_000987_060 Hb_006909_060--Hb_000987_060 Hb_000056_170 Hb_000056_170 Hb_006909_060--Hb_000056_170 Hb_171900_020 Hb_171900_020 Hb_006909_060--Hb_171900_020 Hb_002701_220 Hb_002701_220 Hb_006909_060--Hb_002701_220 Hb_001944_020 Hb_001944_020 Hb_006909_060--Hb_001944_020 Hb_002217_020 Hb_002217_020 Hb_001856_200--Hb_002217_020 Hb_001825_060 Hb_001825_060 Hb_001856_200--Hb_001825_060 Hb_001856_200--Hb_000987_060 Hb_141990_040 Hb_141990_040 Hb_001856_200--Hb_141990_040 Hb_000009_450 Hb_000009_450 Hb_001856_200--Hb_000009_450 Hb_000342_060--Hb_000164_020 Hb_001246_110 Hb_001246_110 Hb_000342_060--Hb_001246_110 Hb_000056_210 Hb_000056_210 Hb_000342_060--Hb_000056_210 Hb_000342_060--Hb_095296_010 Hb_000868_110 Hb_000868_110 Hb_000342_060--Hb_000868_110 Hb_000856_380 Hb_000856_380 Hb_000342_060--Hb_000856_380 Hb_000164_020--Hb_001246_110 Hb_000869_080 Hb_000869_080 Hb_000164_020--Hb_000869_080 Hb_004208_030 Hb_004208_030 Hb_000164_020--Hb_004208_030 Hb_001766_060 Hb_001766_060 Hb_000164_020--Hb_001766_060 Hb_000164_020--Hb_002217_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2869 54.4563 27.7454 28.9063 8.82632 11.3954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2326 58.6994 31.323 12.9046 11.5926

CAGE analysis