Hb_000056_170

Information

Type -
Description -
Location Contig56: 271066-274079
Sequence    

Annotation

kegg
ID rcu:RCOM_0141700
description hypothetical protein
nr
ID XP_002534442.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L736
description F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2
trembl
ID B9T873
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0141700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48704: 271154-274075 , PASA_asmbl_48705: 271240-274075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006909_060 0.1243939183 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
3 Hb_003411_030 0.1416059088 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
4 Hb_002572_050 0.1422522593 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
5 Hb_000258_380 0.1468003536 - - PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]
6 Hb_000953_050 0.1531998771 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
7 Hb_000210_010 0.1534233019 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
8 Hb_002097_200 0.1542791852 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
9 Hb_003078_050 0.1575077748 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
10 Hb_002701_220 0.157638696 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
11 Hb_000987_060 0.15965773 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
12 Hb_028207_040 0.161096617 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
13 Hb_000215_350 0.1612262551 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
14 Hb_003605_240 0.1614288448 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
15 Hb_000634_070 0.1628401152 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
16 Hb_003097_100 0.1709308459 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
17 Hb_001794_060 0.172735162 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001369_570 0.175309514 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
19 Hb_141990_040 0.175366561 - - Protein SCAR2, putative [Ricinus communis]
20 Hb_000342_060 0.1754049405 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000056_170 Hb_000056_170 Hb_006909_060 Hb_006909_060 Hb_000056_170--Hb_006909_060 Hb_003411_030 Hb_003411_030 Hb_000056_170--Hb_003411_030 Hb_002572_050 Hb_002572_050 Hb_000056_170--Hb_002572_050 Hb_000258_380 Hb_000258_380 Hb_000056_170--Hb_000258_380 Hb_000953_050 Hb_000953_050 Hb_000056_170--Hb_000953_050 Hb_000210_010 Hb_000210_010 Hb_000056_170--Hb_000210_010 Hb_006909_060--Hb_000210_010 Hb_000987_060 Hb_000987_060 Hb_006909_060--Hb_000987_060 Hb_171900_020 Hb_171900_020 Hb_006909_060--Hb_171900_020 Hb_002701_220 Hb_002701_220 Hb_006909_060--Hb_002701_220 Hb_001944_020 Hb_001944_020 Hb_006909_060--Hb_001944_020 Hb_004774_020 Hb_004774_020 Hb_003411_030--Hb_004774_020 Hb_003925_040 Hb_003925_040 Hb_003411_030--Hb_003925_040 Hb_004108_240 Hb_004108_240 Hb_003411_030--Hb_004108_240 Hb_003411_030--Hb_000953_050 Hb_011631_010 Hb_011631_010 Hb_003411_030--Hb_011631_010 Hb_001437_010 Hb_001437_010 Hb_003411_030--Hb_001437_010 Hb_002572_050--Hb_000953_050 Hb_005496_180 Hb_005496_180 Hb_002572_050--Hb_005496_180 Hb_001369_570 Hb_001369_570 Hb_002572_050--Hb_001369_570 Hb_001794_060 Hb_001794_060 Hb_002572_050--Hb_001794_060 Hb_000215_350 Hb_000215_350 Hb_002572_050--Hb_000215_350 Hb_008511_100 Hb_008511_100 Hb_002572_050--Hb_008511_100 Hb_003078_050 Hb_003078_050 Hb_000258_380--Hb_003078_050 Hb_000634_070 Hb_000634_070 Hb_000258_380--Hb_000634_070 Hb_003097_100 Hb_003097_100 Hb_000258_380--Hb_003097_100 Hb_010921_030 Hb_010921_030 Hb_000258_380--Hb_010921_030 Hb_001525_010 Hb_001525_010 Hb_000258_380--Hb_001525_010 Hb_028207_040 Hb_028207_040 Hb_000953_050--Hb_028207_040 Hb_000953_050--Hb_005496_180 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_007943_050 Hb_007943_050 Hb_000210_010--Hb_007943_050 Hb_000649_130 Hb_000649_130 Hb_000210_010--Hb_000649_130 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000342_060 Hb_000342_060 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6262 128.151 22.659 36.9833 19.427 16.7051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.899 74.2662 44.7842 10.3922 22.627

CAGE analysis