Hb_001525_010

Information

Type -
Description -
Location Contig1525: 40647-51488
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10630g
description POPTRDRAFT_669488; hypothetical protein
nr
ID XP_012077482.1
description PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
swissprot
ID O67588
description Chaperone protein ClpB OS=Aquifex aeolicus (strain VF5) GN=clpB PE=3 SV=1
trembl
ID A0A067KDG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07812 PE=4 SV=1
Gene Ontology
ID GO:0016787
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13110: 46946-51602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001525_010 0.0 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
2 Hb_028207_040 0.1056652864 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
3 Hb_003506_070 0.1110759895 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
4 Hb_003125_030 0.1141069712 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
5 Hb_000953_050 0.1182838507 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
6 Hb_000540_110 0.1218553547 - - hypothetical protein PRUPE_ppa000777mg [Prunus persica]
7 Hb_116086_010 0.1269642542 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
8 Hb_000130_280 0.1341480046 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_003055_140 0.1350885341 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
10 Hb_000069_230 0.1383823543 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
11 Hb_004440_040 0.1400286318 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_001629_060 0.140481075 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
13 Hb_010921_030 0.1413235539 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
14 Hb_001369_570 0.1421040776 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
15 Hb_003097_100 0.1425363908 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
16 Hb_000123_350 0.1443174431 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
17 Hb_000347_120 0.1448626232 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
18 Hb_003078_050 0.1466734342 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
19 Hb_002485_040 0.1479363436 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
20 Hb_003120_050 0.1489984708 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]

Gene co-expression network

sample Hb_001525_010 Hb_001525_010 Hb_028207_040 Hb_028207_040 Hb_001525_010--Hb_028207_040 Hb_003506_070 Hb_003506_070 Hb_001525_010--Hb_003506_070 Hb_003125_030 Hb_003125_030 Hb_001525_010--Hb_003125_030 Hb_000953_050 Hb_000953_050 Hb_001525_010--Hb_000953_050 Hb_000540_110 Hb_000540_110 Hb_001525_010--Hb_000540_110 Hb_116086_010 Hb_116086_010 Hb_001525_010--Hb_116086_010 Hb_028207_040--Hb_000953_050 Hb_003078_050 Hb_003078_050 Hb_028207_040--Hb_003078_050 Hb_003120_050 Hb_003120_050 Hb_028207_040--Hb_003120_050 Hb_001369_570 Hb_001369_570 Hb_028207_040--Hb_001369_570 Hb_000069_230 Hb_000069_230 Hb_028207_040--Hb_000069_230 Hb_000465_080 Hb_000465_080 Hb_003506_070--Hb_000465_080 Hb_003506_070--Hb_003125_030 Hb_003506_070--Hb_000540_110 Hb_011909_060 Hb_011909_060 Hb_003506_070--Hb_011909_060 Hb_004218_090 Hb_004218_090 Hb_003506_070--Hb_004218_090 Hb_104265_030 Hb_104265_030 Hb_003125_030--Hb_104265_030 Hb_012226_010 Hb_012226_010 Hb_003125_030--Hb_012226_010 Hb_000540_120 Hb_000540_120 Hb_003125_030--Hb_000540_120 Hb_000327_280 Hb_000327_280 Hb_003125_030--Hb_000327_280 Hb_005496_180 Hb_005496_180 Hb_000953_050--Hb_005496_180 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_002572_050 Hb_002572_050 Hb_000953_050--Hb_002572_050 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_125126_010 Hb_125126_010 Hb_000540_110--Hb_125126_010 Hb_000130_280 Hb_000130_280 Hb_000540_110--Hb_000130_280 Hb_014834_060 Hb_014834_060 Hb_000540_110--Hb_014834_060 Hb_010712_040 Hb_010712_040 Hb_000540_110--Hb_010712_040 Hb_001123_290 Hb_001123_290 Hb_116086_010--Hb_001123_290 Hb_000832_030 Hb_000832_030 Hb_116086_010--Hb_000832_030 Hb_001864_060 Hb_001864_060 Hb_116086_010--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_116086_010--Hb_002005_110 Hb_003411_110 Hb_003411_110 Hb_116086_010--Hb_003411_110 Hb_155396_010 Hb_155396_010 Hb_116086_010--Hb_155396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2683 67.7069 10.4702 12.1536 9.22834 14.4393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9534 8.39393 16.999 9.30332 13.7254

CAGE analysis