Hb_000130_280

Information

Type -
Description -
Location Contig130: 235849-238584
Sequence    

Annotation

kegg
ID rcu:RCOM_0105120
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_012078551.1
description PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9LNC4
description Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1
trembl
ID A0A067KL07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14702 PE=4 SV=1
Gene Ontology
ID GO:0016740
description global transcription factor group isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08923: 235870-237836 , PASA_asmbl_08924: 238055-238158
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_280 0.0 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_004899_040 0.0783692966 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
3 Hb_125126_010 0.0823799308 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
4 Hb_012082_010 0.0889678816 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
5 Hb_011161_020 0.0914091468 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
6 Hb_011249_060 0.0936769019 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
7 Hb_009302_030 0.1000844277 - - hypothetical protein RCOM_1176340 [Ricinus communis]
8 Hb_005188_040 0.10090128 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
9 Hb_000347_120 0.1053213894 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
10 Hb_010661_020 0.1060923628 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
11 Hb_000373_100 0.1063881075 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
12 Hb_004310_040 0.1093598841 - - conserved hypothetical protein [Ricinus communis]
13 Hb_044653_020 0.1104831847 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
14 Hb_006738_050 0.1148912603 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
15 Hb_000574_420 0.1153138918 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
16 Hb_000265_090 0.1158700365 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
17 Hb_001427_150 0.1166541644 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
18 Hb_003018_040 0.1172332917 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
19 Hb_000094_090 0.1174684681 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
20 Hb_000358_200 0.117607422 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_280 Hb_000130_280 Hb_004899_040 Hb_004899_040 Hb_000130_280--Hb_004899_040 Hb_125126_010 Hb_125126_010 Hb_000130_280--Hb_125126_010 Hb_012082_010 Hb_012082_010 Hb_000130_280--Hb_012082_010 Hb_011161_020 Hb_011161_020 Hb_000130_280--Hb_011161_020 Hb_011249_060 Hb_011249_060 Hb_000130_280--Hb_011249_060 Hb_009302_030 Hb_009302_030 Hb_000130_280--Hb_009302_030 Hb_004899_040--Hb_011249_060 Hb_000363_120 Hb_000363_120 Hb_004899_040--Hb_000363_120 Hb_004899_040--Hb_009302_030 Hb_000094_090 Hb_000094_090 Hb_004899_040--Hb_000094_090 Hb_000649_250 Hb_000649_250 Hb_004899_040--Hb_000649_250 Hb_000703_200 Hb_000703_200 Hb_004899_040--Hb_000703_200 Hb_006738_050 Hb_006738_050 Hb_125126_010--Hb_006738_050 Hb_004310_040 Hb_004310_040 Hb_125126_010--Hb_004310_040 Hb_125126_010--Hb_011249_060 Hb_005188_040 Hb_005188_040 Hb_125126_010--Hb_005188_040 Hb_000123_350 Hb_000123_350 Hb_125126_010--Hb_000123_350 Hb_044653_020 Hb_044653_020 Hb_012082_010--Hb_044653_020 Hb_002485_040 Hb_002485_040 Hb_012082_010--Hb_002485_040 Hb_000896_060 Hb_000896_060 Hb_012082_010--Hb_000896_060 Hb_003018_040 Hb_003018_040 Hb_012082_010--Hb_003018_040 Hb_000218_020 Hb_000218_020 Hb_012082_010--Hb_000218_020 Hb_000574_420 Hb_000574_420 Hb_011161_020--Hb_000574_420 Hb_006185_060 Hb_006185_060 Hb_011161_020--Hb_006185_060 Hb_003047_020 Hb_003047_020 Hb_011161_020--Hb_003047_020 Hb_011161_020--Hb_009302_030 Hb_004236_010 Hb_004236_010 Hb_011161_020--Hb_004236_010 Hb_000122_220 Hb_000122_220 Hb_011161_020--Hb_000122_220 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_011249_060--Hb_009302_030 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.53255 24.7773 8.81428 6.61745 5.18533 5.27078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.66398 4.02765 4.16719 5.89296 9.23063

CAGE analysis