Hb_011161_020

Information

Type -
Description -
Location Contig11161: 22011-27412
Sequence    

Annotation

kegg
ID rcu:RCOM_1031510
description RNA binding protein, putative (EC:3.1.13.1)
nr
ID XP_012078189.1
description PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
swissprot
ID P0DM58
description DIS3-like exonuclease 2 OS=Arabidopsis thaliana GN=SOV PE=1 SV=1
trembl
ID A0A067K983
description DIS3-like exonuclease 2 OS=Jatropha curcas GN=JCGZ_12063 PE=3 SV=1
Gene Ontology
ID GO:0000932
description dis3-like exonuclease 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03518: 22425-22723 , PASA_asmbl_03519: 22773-22945 , PASA_asmbl_03520: 23311-27573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011161_020 0.0 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
2 Hb_000574_420 0.0615920606 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
3 Hb_006185_060 0.0638101604 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
4 Hb_003047_020 0.0812315338 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
5 Hb_009302_030 0.0854284325 - - hypothetical protein RCOM_1176340 [Ricinus communis]
6 Hb_004236_010 0.0910569798 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
7 Hb_000122_220 0.0912887011 - - Prenylated Rab acceptor protein, putative [Ricinus communis]
8 Hb_000130_280 0.0914091468 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_000703_200 0.0937776687 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
10 Hb_000645_130 0.0953914239 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
11 Hb_012368_100 0.0955842693 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
12 Hb_004659_090 0.0957044452 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
13 Hb_004899_040 0.0957842533 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
14 Hb_000479_070 0.0959048669 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
15 Hb_000941_030 0.0967010045 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
16 Hb_000265_090 0.0970928244 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
17 Hb_000358_200 0.0983283381 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
18 Hb_000347_120 0.0991444606 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
19 Hb_000703_130 0.0997382162 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
20 Hb_044653_020 0.1028789824 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]

Gene co-expression network

sample Hb_011161_020 Hb_011161_020 Hb_000574_420 Hb_000574_420 Hb_011161_020--Hb_000574_420 Hb_006185_060 Hb_006185_060 Hb_011161_020--Hb_006185_060 Hb_003047_020 Hb_003047_020 Hb_011161_020--Hb_003047_020 Hb_009302_030 Hb_009302_030 Hb_011161_020--Hb_009302_030 Hb_004236_010 Hb_004236_010 Hb_011161_020--Hb_004236_010 Hb_000122_220 Hb_000122_220 Hb_011161_020--Hb_000122_220 Hb_000574_420--Hb_006185_060 Hb_004032_040 Hb_004032_040 Hb_000574_420--Hb_004032_040 Hb_012368_100 Hb_012368_100 Hb_000574_420--Hb_012368_100 Hb_000347_120 Hb_000347_120 Hb_000574_420--Hb_000347_120 Hb_000941_030 Hb_000941_030 Hb_000574_420--Hb_000941_030 Hb_000120_660 Hb_000120_660 Hb_006185_060--Hb_000120_660 Hb_006185_060--Hb_000122_220 Hb_002329_020 Hb_002329_020 Hb_006185_060--Hb_002329_020 Hb_000479_070 Hb_000479_070 Hb_006185_060--Hb_000479_070 Hb_021596_010 Hb_021596_010 Hb_003047_020--Hb_021596_010 Hb_000003_410 Hb_000003_410 Hb_003047_020--Hb_000003_410 Hb_020805_150 Hb_020805_150 Hb_003047_020--Hb_020805_150 Hb_000703_200 Hb_000703_200 Hb_003047_020--Hb_000703_200 Hb_012490_010 Hb_012490_010 Hb_003047_020--Hb_012490_010 Hb_003047_020--Hb_009302_030 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_004236_010--Hb_000645_130 Hb_004236_010--Hb_009302_030 Hb_000500_300 Hb_000500_300 Hb_004236_010--Hb_000500_300 Hb_004659_090 Hb_004659_090 Hb_004236_010--Hb_004659_090 Hb_000189_630 Hb_000189_630 Hb_004236_010--Hb_000189_630 Hb_007283_030 Hb_007283_030 Hb_004236_010--Hb_007283_030 Hb_000358_200 Hb_000358_200 Hb_000122_220--Hb_000358_200 Hb_000122_220--Hb_004659_090 Hb_001231_090 Hb_001231_090 Hb_000122_220--Hb_001231_090 Hb_002687_090 Hb_002687_090 Hb_000122_220--Hb_002687_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.82299 19.1623 8.23068 5.65525 5.75607 6.23415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4288 2.56919 6.68055 6.56893 9.2147

CAGE analysis