Hb_004659_090

Information

Type -
Description -
Location Contig4659: 57635-62723
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03480g
description POPTRDRAFT_568380; hypothetical protein
nr
ID XP_012066979.1
description PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
swissprot
ID O13821
description Vacuolar protein sorting-associated protein 27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst4 PE=3 SV=1
trembl
ID A0A067L1B2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02956 PE=4 SV=1
Gene Ontology
ID GO:0009506
description tetratricopeptide repeat-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44074: 57703-62732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004659_090 0.0 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
2 Hb_000645_130 0.0617450527 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
3 Hb_170077_010 0.0659044319 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
4 Hb_000958_050 0.0660336353 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
5 Hb_000806_030 0.0665003812 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
6 Hb_009302_030 0.0700147786 - - hypothetical protein RCOM_1176340 [Ricinus communis]
7 Hb_000110_350 0.072576488 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
8 Hb_023344_140 0.0728032505 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
9 Hb_002461_020 0.074090909 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
10 Hb_000358_220 0.0751066385 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
11 Hb_005701_050 0.0752391296 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
12 Hb_003939_060 0.0768811511 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000996_020 0.0777473459 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
14 Hb_005333_140 0.0784777734 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
15 Hb_000941_030 0.0785325041 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
16 Hb_000030_140 0.0788067043 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
17 Hb_004236_010 0.0797881424 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
18 Hb_005403_010 0.0798103796 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
19 Hb_003929_210 0.079899871 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
20 Hb_004044_050 0.080248376 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]

Gene co-expression network

sample Hb_004659_090 Hb_004659_090 Hb_000645_130 Hb_000645_130 Hb_004659_090--Hb_000645_130 Hb_170077_010 Hb_170077_010 Hb_004659_090--Hb_170077_010 Hb_000958_050 Hb_000958_050 Hb_004659_090--Hb_000958_050 Hb_000806_030 Hb_000806_030 Hb_004659_090--Hb_000806_030 Hb_009302_030 Hb_009302_030 Hb_004659_090--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_004659_090--Hb_000110_350 Hb_000645_130--Hb_009302_030 Hb_000645_130--Hb_000958_050 Hb_003939_060 Hb_003939_060 Hb_000645_130--Hb_003939_060 Hb_000500_300 Hb_000500_300 Hb_000645_130--Hb_000500_300 Hb_000645_130--Hb_000806_030 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000358_220 Hb_000358_220 Hb_170077_010--Hb_000358_220 Hb_000996_020 Hb_000996_020 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_002007_110 Hb_002007_110 Hb_000958_050--Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_000958_050--Hb_012055_110 Hb_002056_100 Hb_002056_100 Hb_000806_030--Hb_002056_100 Hb_001279_040 Hb_001279_040 Hb_000806_030--Hb_001279_040 Hb_000179_190 Hb_000179_190 Hb_000806_030--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000806_030--Hb_003929_210 Hb_009302_030--Hb_003939_060 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_000110_350--Hb_000179_190 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000110_350--Hb_000445_060 Hb_000110_350--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7804 26.4804 19.5781 13.944 13.4462 10.3133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.51193 4.9315 10.5525 12.9883 20.862

CAGE analysis