Hb_000500_300

Information

Type -
Description -
Location Contig500: 213218-223264
Sequence    

Annotation

kegg
ID vvi:100257259
description nucleolar protein 10
nr
ID XP_012091870.1
description PREDICTED: nucleolar protein 10 [Jatropha curcas]
swissprot
ID Q7T0Q5
description Nucleolar protein 10 OS=Xenopus laevis GN=nol10 PE=2 SV=1
trembl
ID A0A067JBJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21647 PE=4 SV=1
Gene Ontology
ID GO:0005730
description nucleolar protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45760: 213298-214590 , PASA_asmbl_45761: 213298-216759 , PASA_asmbl_45762: 217064-217641 , PASA_asmbl_45764: 220693-223095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_300 0.0 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
2 Hb_001534_210 0.0675413856 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
3 Hb_000645_130 0.0715754881 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
4 Hb_002056_100 0.0758938565 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
5 Hb_005523_020 0.0759987151 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
6 Hb_000445_060 0.0764343964 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
7 Hb_003849_140 0.0775332858 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
8 Hb_004236_010 0.0778067937 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
9 Hb_000868_120 0.079924597 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
10 Hb_007044_110 0.0799666209 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000205_260 0.0805887941 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
12 Hb_004032_230 0.081126 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
13 Hb_000189_630 0.0819438071 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_009302_030 0.0838316405 - - hypothetical protein RCOM_1176340 [Ricinus communis]
15 Hb_007576_230 0.0848882579 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
16 Hb_000996_020 0.0861921162 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
17 Hb_000676_330 0.0866014609 - - protein with unknown function [Ricinus communis]
18 Hb_001636_050 0.0883001519 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
19 Hb_005333_140 0.0890142523 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
20 Hb_023226_070 0.0890732367 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000500_300 Hb_000500_300 Hb_001534_210 Hb_001534_210 Hb_000500_300--Hb_001534_210 Hb_000645_130 Hb_000645_130 Hb_000500_300--Hb_000645_130 Hb_002056_100 Hb_002056_100 Hb_000500_300--Hb_002056_100 Hb_005523_020 Hb_005523_020 Hb_000500_300--Hb_005523_020 Hb_000445_060 Hb_000445_060 Hb_000500_300--Hb_000445_060 Hb_003849_140 Hb_003849_140 Hb_000500_300--Hb_003849_140 Hb_004032_230 Hb_004032_230 Hb_001534_210--Hb_004032_230 Hb_007426_060 Hb_007426_060 Hb_001534_210--Hb_007426_060 Hb_001534_210--Hb_003849_140 Hb_000099_040 Hb_000099_040 Hb_001534_210--Hb_000099_040 Hb_001231_090 Hb_001231_090 Hb_001534_210--Hb_001231_090 Hb_009302_030 Hb_009302_030 Hb_001534_210--Hb_009302_030 Hb_000645_130--Hb_009302_030 Hb_000958_050 Hb_000958_050 Hb_000645_130--Hb_000958_050 Hb_004659_090 Hb_004659_090 Hb_000645_130--Hb_004659_090 Hb_003939_060 Hb_003939_060 Hb_000645_130--Hb_003939_060 Hb_000806_030 Hb_000806_030 Hb_000645_130--Hb_000806_030 Hb_002056_100--Hb_000806_030 Hb_002056_100--Hb_000645_130 Hb_002056_100--Hb_009302_030 Hb_002056_100--Hb_004659_090 Hb_000030_140 Hb_000030_140 Hb_002056_100--Hb_000030_140 Hb_000205_260 Hb_000205_260 Hb_005523_020--Hb_000205_260 Hb_007044_110 Hb_007044_110 Hb_005523_020--Hb_007044_110 Hb_000457_230 Hb_000457_230 Hb_005523_020--Hb_000457_230 Hb_001636_050 Hb_001636_050 Hb_005523_020--Hb_001636_050 Hb_005523_020--Hb_001231_090 Hb_007305_020 Hb_007305_020 Hb_005523_020--Hb_007305_020 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_000915_060 Hb_000915_060 Hb_003849_140--Hb_000915_060 Hb_003849_140--Hb_004032_230 Hb_000723_110 Hb_000723_110 Hb_003849_140--Hb_000723_110 Hb_026980_020 Hb_026980_020 Hb_003849_140--Hb_026980_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93806 13.13 12.0007 3.96891 7.53248 5.27602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08185 4.34445 4.40632 7.42785 9.30283

CAGE analysis