Hb_003849_140

Information

Type -
Description -
Location Contig3849: 88966-94457
Sequence    

Annotation

kegg
ID rcu:RCOM_0794020
description ATP binding protein, putative
nr
ID XP_012085525.1
description PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
swissprot
ID F4HVG8
description Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana GN=CSK PE=1 SV=1
trembl
ID A0A067K4I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17847 PE=4 SV=1
Gene Ontology
ID GO:0009507
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38760: 89524-90796 , PASA_asmbl_38761: 91098-91695 , PASA_asmbl_38762: 92207-94235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_140 0.0 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
2 Hb_001534_210 0.0581579398 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
3 Hb_000915_060 0.0624610442 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
4 Hb_004032_230 0.0687966786 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
5 Hb_000723_110 0.0738814561 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
6 Hb_026980_020 0.0754871845 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
7 Hb_000500_300 0.0775332858 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
8 Hb_007426_060 0.0814766523 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
9 Hb_000373_230 0.0817945387 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_060094_020 0.0828544222 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
11 Hb_001636_050 0.082883096 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
12 Hb_023226_070 0.0844658024 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003711_010 0.085642835 - - isopropylmalate synthase, putative [Ricinus communis]
14 Hb_001277_020 0.086332164 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
15 Hb_000236_470 0.0867186435 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
16 Hb_012565_050 0.086752976 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
17 Hb_007017_070 0.0877832608 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
18 Hb_000340_030 0.0881928687 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
19 Hb_000094_090 0.0894703565 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
20 Hb_004870_050 0.0899400281 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]

Gene co-expression network

sample Hb_003849_140 Hb_003849_140 Hb_001534_210 Hb_001534_210 Hb_003849_140--Hb_001534_210 Hb_000915_060 Hb_000915_060 Hb_003849_140--Hb_000915_060 Hb_004032_230 Hb_004032_230 Hb_003849_140--Hb_004032_230 Hb_000723_110 Hb_000723_110 Hb_003849_140--Hb_000723_110 Hb_026980_020 Hb_026980_020 Hb_003849_140--Hb_026980_020 Hb_000500_300 Hb_000500_300 Hb_003849_140--Hb_000500_300 Hb_001534_210--Hb_004032_230 Hb_007426_060 Hb_007426_060 Hb_001534_210--Hb_007426_060 Hb_000099_040 Hb_000099_040 Hb_001534_210--Hb_000099_040 Hb_001231_090 Hb_001231_090 Hb_001534_210--Hb_001231_090 Hb_009302_030 Hb_009302_030 Hb_001534_210--Hb_009302_030 Hb_000373_230 Hb_000373_230 Hb_000915_060--Hb_000373_230 Hb_001277_020 Hb_001277_020 Hb_000915_060--Hb_001277_020 Hb_000915_060--Hb_000723_110 Hb_001410_020 Hb_001410_020 Hb_000915_060--Hb_001410_020 Hb_000236_470 Hb_000236_470 Hb_000915_060--Hb_000236_470 Hb_000264_070 Hb_000264_070 Hb_004032_230--Hb_000264_070 Hb_102438_030 Hb_102438_030 Hb_004032_230--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_004032_230--Hb_000102_050 Hb_004032_230--Hb_001231_090 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000809_160 Hb_000809_160 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000094_090 Hb_000094_090 Hb_000723_110--Hb_000094_090 Hb_000723_110--Hb_000373_230 Hb_154580_010 Hb_154580_010 Hb_026980_020--Hb_154580_010 Hb_000340_030 Hb_000340_030 Hb_026980_020--Hb_000340_030 Hb_000139_320 Hb_000139_320 Hb_026980_020--Hb_000139_320 Hb_003711_010 Hb_003711_010 Hb_026980_020--Hb_003711_010 Hb_005542_050 Hb_005542_050 Hb_026980_020--Hb_005542_050 Hb_000500_300--Hb_001534_210 Hb_000645_130 Hb_000645_130 Hb_000500_300--Hb_000645_130 Hb_002056_100 Hb_002056_100 Hb_000500_300--Hb_002056_100 Hb_005523_020 Hb_005523_020 Hb_000500_300--Hb_005523_020 Hb_000445_060 Hb_000445_060 Hb_000500_300--Hb_000445_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06392 10.6091 8.74841 2.90373 5.71806 4.88628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05944 3.69125 2.959 5.3079 4.28451

CAGE analysis