Hb_000099_040

Information

Type -
Description -
Location Contig99: 49633-54951
Sequence    

Annotation

kegg
ID tcc:TCM_016384
description POZ/BTB containin G-protein 1 isoform 1
nr
ID CDP12109.1
description unnamed protein product [Coffea canephora]
swissprot
ID O82343
description BTB/POZ domain-containing protein At2g46260 OS=Arabidopsis thaliana GN=At2g46260 PE=2 SV=2
trembl
ID A0A068UV18
description Coffea canephora DH200=94 genomic scaffold, scaffold_62 OS=Coffea canephora GN=GSCOC_T00035497001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64716: 51563-54862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_040 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_029977_040 0.0467002906 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
3 Hb_000243_210 0.0511813778 - - protein with unknown function [Ricinus communis]
4 Hb_001673_050 0.0537539479 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
5 Hb_001318_070 0.0571178529 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
6 Hb_001279_120 0.0583353732 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
7 Hb_001534_210 0.0589994839 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
8 Hb_000879_040 0.0617853738 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
9 Hb_001430_080 0.0630160159 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
10 Hb_000176_100 0.0630421809 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
11 Hb_007426_060 0.0634851419 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
12 Hb_001277_020 0.0644932476 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
13 Hb_003835_070 0.0655101018 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
14 Hb_012194_030 0.0663713931 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
15 Hb_000949_020 0.0663950366 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
16 Hb_001191_120 0.0664476028 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
17 Hb_005542_140 0.0665184271 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
18 Hb_002085_030 0.0670933768 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
19 Hb_004976_010 0.0675253701 - - hypothetical protein RCOM_1429110 [Ricinus communis]
20 Hb_005357_260 0.0685062526 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000099_040 Hb_000099_040 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_000243_210 Hb_000243_210 Hb_000099_040--Hb_000243_210 Hb_001673_050 Hb_001673_050 Hb_000099_040--Hb_001673_050 Hb_001318_070 Hb_001318_070 Hb_000099_040--Hb_001318_070 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210 Hb_002768_050 Hb_002768_050 Hb_029977_040--Hb_002768_050 Hb_001617_040 Hb_001617_040 Hb_029977_040--Hb_001617_040 Hb_004976_010 Hb_004976_010 Hb_029977_040--Hb_004976_010 Hb_029977_040--Hb_001279_120 Hb_005542_140 Hb_005542_140 Hb_029977_040--Hb_005542_140 Hb_000243_210--Hb_001318_070 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_002205_250 Hb_002205_250 Hb_000243_210--Hb_002205_250 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040 Hb_002849_170 Hb_002849_170 Hb_001673_050--Hb_002849_170 Hb_001668_010 Hb_001668_010 Hb_001673_050--Hb_001668_010 Hb_001673_050--Hb_004976_010 Hb_007426_060 Hb_007426_060 Hb_001673_050--Hb_007426_060 Hb_004429_010 Hb_004429_010 Hb_001673_050--Hb_004429_010 Hb_001318_070--Hb_000879_040 Hb_001318_070--Hb_000174_060 Hb_001268_280 Hb_001268_280 Hb_001318_070--Hb_001268_280 Hb_001318_070--Hb_002205_250 Hb_001545_150 Hb_001545_150 Hb_001279_120--Hb_001545_150 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030 Hb_004032_230 Hb_004032_230 Hb_001534_210--Hb_004032_230 Hb_001534_210--Hb_007426_060 Hb_003849_140 Hb_003849_140 Hb_001534_210--Hb_003849_140 Hb_001231_090 Hb_001231_090 Hb_001534_210--Hb_001231_090 Hb_009302_030 Hb_009302_030 Hb_001534_210--Hb_009302_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6471 36.5635 22.8221 16.247 23.6749 17.9165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.24 11.2598 15.4409 22.2999 24.0237

CAGE analysis