Hb_001279_120

Information

Type transcription factor
Description TF Family: FAR1
Location Contig1279: 135524-137980
Sequence    

Annotation

kegg
ID tcc:TCM_017061
description Far1-related sequence 5, putative isoform 1
nr
ID XP_012072770.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A067LPB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10194 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08591: 137869-138477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_120 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
2 Hb_001545_150 0.057127796 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
3 Hb_000099_040 0.0583353732 - - unnamed protein product [Coffea canephora]
4 Hb_002329_020 0.0584210352 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
5 Hb_009150_020 0.0607255628 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
6 Hb_002085_030 0.0607389968 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
7 Hb_012194_030 0.0620223048 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
8 Hb_000479_070 0.0627133612 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
9 Hb_000866_460 0.0633058956 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
10 Hb_031042_050 0.0636261959 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
11 Hb_029977_040 0.0639302599 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
12 Hb_001089_050 0.0660768255 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
13 Hb_000243_210 0.0706061594 - - protein with unknown function [Ricinus communis]
14 Hb_000025_730 0.0710349547 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
15 Hb_143766_060 0.0719666591 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
16 Hb_007810_110 0.072106796 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
17 Hb_000861_080 0.0732622395 - - PREDICTED: protein ELC-like [Jatropha curcas]
18 Hb_002253_080 0.07591418 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
19 Hb_001322_130 0.0760480271 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
20 Hb_003866_080 0.0762338361 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]

Gene co-expression network

sample Hb_001279_120 Hb_001279_120 Hb_001545_150 Hb_001545_150 Hb_001279_120--Hb_001545_150 Hb_000099_040 Hb_000099_040 Hb_001279_120--Hb_000099_040 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030 Hb_000479_070 Hb_000479_070 Hb_001545_150--Hb_000479_070 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_000402_230 Hb_000402_230 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_000243_210 Hb_000243_210 Hb_000099_040--Hb_000243_210 Hb_001673_050 Hb_001673_050 Hb_000099_040--Hb_001673_050 Hb_001318_070 Hb_001318_070 Hb_000099_040--Hb_001318_070 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210 Hb_000061_030 Hb_000061_030 Hb_002329_020--Hb_000061_030 Hb_002267_140 Hb_002267_140 Hb_002329_020--Hb_002267_140 Hb_002329_020--Hb_002085_030 Hb_002329_020--Hb_012194_030 Hb_001754_030 Hb_001754_030 Hb_002329_020--Hb_001754_030 Hb_006117_080 Hb_006117_080 Hb_009150_020--Hb_006117_080 Hb_002783_040 Hb_002783_040 Hb_009150_020--Hb_002783_040 Hb_003470_080 Hb_003470_080 Hb_009150_020--Hb_003470_080 Hb_002798_070 Hb_002798_070 Hb_009150_020--Hb_002798_070 Hb_000069_470 Hb_000069_470 Hb_009150_020--Hb_000069_470 Hb_012305_030 Hb_012305_030 Hb_002085_030--Hb_012305_030 Hb_002085_030--Hb_012194_030 Hb_003866_080 Hb_003866_080 Hb_002085_030--Hb_003866_080 Hb_001767_140 Hb_001767_140 Hb_002085_030--Hb_001767_140 Hb_000329_370 Hb_000329_370 Hb_002085_030--Hb_000329_370 Hb_012194_030--Hb_000329_370 Hb_162275_050 Hb_162275_050 Hb_012194_030--Hb_162275_050 Hb_003835_070 Hb_003835_070 Hb_012194_030--Hb_003835_070 Hb_010712_050 Hb_010712_050 Hb_012194_030--Hb_010712_050 Hb_012779_090 Hb_012779_090 Hb_012194_030--Hb_012779_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96662 5.14385 2.9258 2.64294 2.95691 2.12924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83647 2.05429 2.53788 2.44761 3.55212

CAGE analysis